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Foliicolous lichens are one of the most abundant epiphytes in tropical rainforests and one of the few groups of organisms that characterize these forests. Tropical rainforests are increasingly affected by anthropogenic disturbance resulting in forest destruction and degradation. However, not much is known on the effects of anthropogenic disturbance on the diversity of foliicolous lichens. Understanding such effects is crucial for the development of appropriate measures for the conservation of such organisms. In this study, foliicolous lichens diversity was investigated in three tropical rainforests in East Africa. Godere Forest in Southwest Ethiopia is a transitional rainforest with a mixture of Afromontane and Guineo-Congolian species. The forest is secondary and has been affected by shifting cultivation, semi-forest coffee management and commercial coffee plantation. Budongo Forest in West Uganda is a Guineo-Congolian rainforest consisting of primary and secondary forests. Kakamega Forest in western Kenya is a transitional rainforest with a mixture of Guineo-Congolian and Afromontane species. The forest is a mosaic of near-primary forest, secondary forests of different seral stages, grasslands, plantations, and natural glades.
More than 10,000 organic chemicals such as pharmaceuticals, ingredients of personal care products and biocides are ubiquitously used in every day life. After their application, many of these chemicals enter the domestic sewer. Research has shown that conventional biological wastewater treatment in municipal wastewater treatment plants (WWTPs) is an insufficient barrier for the release of most of these anthropogenic chemicals into the receiving waters.
This bears unforeseen risks for aquatic wildlife and drinking water resources. Especially for recently introduced and/or detected compounds (so called emerging micropollutants), there is a growing need to investigate the occurrence and fate in WWTPs. In order to get a comprehensive picture on the behavior in municipal wastewater treatment, the following groups of emerging organic micropollutants, spanning a broad range of applications and physico-chemical properties, were selected as target compounds: pharmaceuticals (beta blockers, psycho-active drugs), UV-filters, vulcanization accelerators (benzothiazoles), biocides (anti-dandruffs, preservatives, disinfectants) and pesticides (phenylurea and triazine herbicides).
This study was conducted in Nyungwe National Park (NNP); a biodiversity hotspot Mountain rainforest of high conservation importance in Central Africa, but with little knowledge of its insect communities including butterflies, good indicators of climate change, and forest ecosystem health. The study aimed at availing baseline data on butterfly species diversity and distribution in NNP, for future use in monitoring climate change-driven shifts and the effects of forest fragmentation on the biodiversity of Nyungwe. Butterflies were collected seasonally using fruit-baited traps and hand nets along elevational transects spanning from 1700 m up to 2950 m of altitude. Two hundred forty-two species including 28 endemics to the Albertine Rift and 18 potential local climate change indicators were documented. Species richness and abundance declined with increasing elevation and higher seasonal occurrence was observed during the dry season. This was the first study on the spatial and temporal distribution of butterflies in NNP and further studies could be conducted to add more species and allow a depth understanding of the ecology of Nyungwe butterflies.
Agricultural intensification is leading to a severe decline in farmland biodiversity worldwide. The resulting landscape simplification through the expansion of monocultures and removal of non-crop habitats has a major impact on arthropod communities in agricultural landscapes. While arable fields are often highly disturbed and ephemeral habitats that are unsuitable for many species, non-crop habitats in agroecosystems can provide important refugia. The creation of non-crop habitats through agri-environmental schemes (AES) in intensive agricultural landscapes, such as the ‘Maifeld’ region in western Germany, is intended to mitigate the negative effects of agricultural intensification, although the effectiveness of these measures for nature conservation is still controversial. Therefore, this work focuses on the taxonomic and functional diversity of beetles (Coleoptera) and spiders (Araneida), being important providers of ecosystem services, between wheat fields and different non-crop habitats, namely grassy field margins adjacent to wheat and oilseed rape fields, small- and large-scale set-aside areas sown with wildflowers, and permanent grassland fallows. Arthropods were collected between 2019 and 2020 using pitfall traps and suction sampling. Land-use type influenced beetle and spider diversity in the study area, with significantly higher values in grassland fallows than wheat fields. Surprisingly, species diversity differed little among all non-crop habitats, but all harboured distinct species assemblages. In particular, large long-term grassland fallows showed the largest within-group variation of beetle and spider assemblages and represented important habitats, especially for habitat specialists and threatened species, likely due to their variable soil moisture and complex habitat structure. In contrast, the homogeneous arthropod assemblages of wheat fields exhibited lower trait richness and were dominated by a few predatory species adapted to such disturbed, man-made habitats. Interestingly, all conservation measures complemented each other in that they contributed in different ways to supporting beetles and spiders in agricultural landscapes. Even small-scale non-crop habitats and existing habitat boundaries in an agricultural matrix appear to be valuable habitats for farmland arthropods by enhancing taxonomic diversity. Field margins and small wildflower-sown patches can link isolated non-crop habitats and contribute to a heterogeneous agricultural landscape. Consequently, a combination of various small- and large-scale greening measures leads to increased compositional and configurational landscape heterogeneity, resulting in improved beetle and spider diversity. Considering the ongoing loss of farmland biodiversity worldwide, agri-environmental schemes should be promoted in the future, as they are particularly important for arthropod conservation in intensive agricultural landscapes such as the Maifeld region.
The stands surveyed are among the last closed canopy forests in Rwanda. Their exploration began in the early twentieth century and is still ongoing. Previous studies were mainly concerned with plant sociological issues and presented references to environmental factors in anecdotal form, at best using indirect ordination methods. The present study undertakes a classification of the vegetation with numerical methods and establishes quantitative relationships of the species’ distributional structure to environmental parameters using spatially explicit procedures. For this purpose, 94 samples were taken in 100 m² hexagonal plots. Of these, 70 samples are from Nyungwe, 14 are from Gishwati, and 10 are from Cyamudongo. Given the homogeneity of the terrain and vegetation, all vegetation types encountered, all types of stands, and all vegetation strata were included. The beta diversity is expressed by an average Bray-Curtis dissimilarity of 0.92, and in JOST’S (2007) numbers equivalents, 37.90 equally likely samples would be needed to represent the diversity encountered. Within the survey, 1198 species in 127 families were collected. Among the specimens are 6 local endemics and 40 Albertine Rift endemics. Resulting from UPGMA and FCM-NC, 20 to 40 plant communities were established depending on the level of resolution. It can be inferred by means of a Mantel correlogram that the mean zone of influence of a single vegetation stand, as sampled by a 100 m² plot in Nyungwe Forest, ranges between 0.016 and 3.42 km. Of the communities compiled using FCM-NC and UPGMA, 50% consist of individual samples. Beyond undersampling, natural small-scale discontinuities are reflected by this result. Partial db-RDA resulted in an explained variation of 9.60% and 14.41% for environmental and soil factors, respectively. Utilising variation partitioning analyses based on CCA and tb-RDA, between 21.70% and 37.80% of the variation in vegetation data could be explained. The spatially structured fraction of these parameters accounts for between 30.50% and 49.80% of the explained variation (100%). The purely environmental parameters account for a share of 10.30% to 16.30%, whereby the lower limit originates from the unimodal approach and has lost its statistical significance. The soil variables, also after partial analysis, account for a share of 19.00% to 35.70%. While the residual impact of the climatic parameters is hardly significant, the effect of the soil properties is prevalent. In general, the spatially structured fraction of the parameters is predominant here. While on the broad-scale climatic factors, the altitude a.s.l. and the geology are determining factors, some soil parameters and matrix components also show their impacts here. In the mid-range of the scale, it is the forest matrix, the soil types, and the geology that determine species distribution. While in the fine range of the scale, some unrecorded parameters seem to have an effect, there are also neutral processes that determine species composition.
Aim of this study was the assessment of the conservation status of vascular plants in East African rain forests with the background of establishing an ex-situ culture of local endangered plants at the Botanic Garden of the Maseno University (Kenya).
For a sustainable implementation it was first necessary to learn more about the general species inventory, especially concerning species composition and abundance under human impact, and to assess the conservation priority of each plant species. Representative for East African rain forests, Kakamega Forest (Kenya) and Budongo Forest (Uganda) were selected to serve as model forests.
Beside the general floristic investigations including all vascular plants, a special focus was laid on vascular epiphytes and their vulnerability to forest disturbance. To assess the conservation priority of the plants, a rating system was developed based on seven threat criteria. By carrying out first plant collections, the exsitu culture in Maseno Botanic Garden was already initiated.
In this thesis, I present the results of my studies on taxonomy, systematics, and biogeography of Impatiens (Balsaminaceae) in Madagascar and the Comoro islands.
In Chapter 1 I reviewed the literature on taxonomy and classification of Balsaminaceae, on habitat, world distribution, morphology, molecular phylogenetics and infrageneric classification of the genus Impatiens. In Chapters 2-15 (Fischer & Rahelivololona 2002, 2003, 2004, 2007, 2015a, 2015b, 2015c, 2016, Fischer et al. 2004. 2017, 2018a, b submitted, Rahelivololona et al. 2003) I presented the first results of a revision of Balsaminaceae of Madagascar and the Comoro islands including the description of 78 new species. In Chapter 16 (Yuan et al. 2004) we worked on the phylogeny and biogeography of Balsaminaceae inferred from ITS sequences using combined results from molecular phylogenetic and morphological analyses. In Chapter 17 (Rahelivololona et al. 2018) we conducted a phylogeny and assessment of the infrageneric classification of species in the Malagasy Impatiens (Balsaminaceae) with a particular emphasis on taxa collected from Marojejy.
Below I summarise the most important findings of each chapter and provide an outlook for future studies.
How many species of Impatiens occur in Madagascar and the Comoro islands?
To provide additional information on the taxonomic revision of Impatiens in Madagascar and the Comoro islands, the identification of already described species as well as the description of new species was conducted. Based on herbarium specimens from BR, G, K, NEU, P, TAN and on living plants collected during several field trips, 78 new species and 6 nomina nova have been published and another 70 new taxa are already identified. Actually more than 260 species occur in Madagascar and the Comoro islands and all of them are endemic. For each species, a description of the morphology, phenology, ecology and known distribution range was provided. Apart from new taxa, the delimitation of already described species like Impatiens firmula Baker and Impatiens hildebrandtii Baill. could be clarified by studying the types and by observing the variability in the field.
Are the groups of Impatiens in Madagascar monophyletic, and what is the systematic position of Trimorphopetalum?
Yuan & al. (2004) conducted a molecular phylogenetic study to examine the morphological and karyological evolution, and the historical biogeography of the Balsaminaceae family by using nucleotide sequence data of internal transcribed spacer regions of nuclear ribosomal DNA. The results support the monophyly of the Malagasy endemic section Trimorphopetalum and show that the cleistogamous Impatiens inaperta should be included in the sect. Trimorphopetalum which is the most derived within Impatiens. Therefore, the section Preimpatiens proposed by Perrier de la Bâthie (1934) is paraphyletic.
Rahelivololona & al. (2018) provided a phylogenetic study focused on three subdivisions (based on macromorphological characters) proposed by Perrier de la Bâthie (1934). The analysis was done using two nuclear AP3/DEF homologues (ImpDEF1 and ImpDEF2) and the plastid atpB-rbcL spacer to reassess or assess the monophyly of the Malagasy Impatiens, of the sections Preimpatiens (Humblotianae and Vulgare groups) and Trimorphopetalum. A focus was on the species of Impatiens from the Marojejy National Park and of the morphologically variable species I. elatostemmoides, I. “hammarbyoides”, I. inaperta and I. manaharensis, using monophyly as the primary criterion.
As results the Malagasy Impatiens are paraphyletic and the section Preimpatiens sensu Perrier de la Bâthie (1934) (= subgen. Impatiens sensu Fischer & Rahelivololona 2002) was not resolved as a monophyletic group. The section Trimorphopetalum sensu Perrier de la Bâthie (1934) (= subgen. Trimorphopetalum sensu Fischer & Rahelivololona 2002), however, was strongly confirmed as a monophyletic lineage (BS: 92; BPP: 1). Neither the Humblotianae group nor the Vulgare group was supported as monophyletic. None of the morphologically variable species appeared to be monophyletic and the sampled species of Impatiens from the Marojejy National Park do also not form a monophyletic group.
What are the biogeographical position and the distribution patterns of Impatiens in Madagascar and the Comoro islands?
Investigation of the geographical affinities and species distribution of section Impatiens (including Humblotianae group and Vulgare group) and section Trimorphopetalum were conducted and the origin and evolution as well as species richness and endemism were discussed.
The isolation, the climate and the complex topography of Madagascar have generated the microhabitats and ecological niches favourable to the diversification of Impatiens species. Impatiens of Madagascar with 260 endemic species is actually the largest genus in Madagascar. Therefore, Madagascar and the Comoro islands are among the most species-rich regions in the world for Impatiens.
Future studies
In Impatiens on Madagascar, there remain numerous unresolved questions that need to be adressed:
• A further study based on a much larger molecular data set and sampling from the entire geographic ranges of Impatiens in Madagascar is needed to retest the monophyly of the different subgenera and sections, as well as a molecular dating of the Malagasy Impatiens.
• The study of pollinators as a key for understanding the radiation and species richness is required: Within Impatiens the different shapes of spur are related to pollinators (bees, birds, butterflies and moths). Therefore pollinator observation of specific species need to be done to understand the radiation of species by adaptation and coevolution with these pollinators. A pollination study with a large number of species within section Trimorphopetalum will help to understand the mechanism of complete disappearance of the spur, the shift of pollinators and the evolution of species richness.
• The destruction of the natural habitats of Impatiens and the subsequent reduction of humidity in logged area constitute a severe threat for the survival of many species. The conservation and reforestation of vulnerable areas such as Ankaratra, Daraina, Mandraka and Col des Tapia near Antsirabe is required.
• In terms of conservation and to mitigate the threat on the genus, a study on the ex-situ-conservation of Malagasy Impatiens species is very important as long as some species are suitable for horticultural purposes (e.g. Impatiens mayae-valeriae, Impatiens emiliae and species with broad red spur).
• Finally, the publication of the revision of Impatiens of Madagascar and the Comoro islands will help other botanists to identify the species and will thus increase our knowledge on the group.
The protected areas of Rwanda are facing various challenges resulting from the anthropogenic activities of the surrounding communities especially in the adjacent area to Cyamudongo isolated rain forest, which results in climate change, soil degradation, and loss of biodiversity. Therefore, this study aims to broaden current knowledge on the impact of sustainable Agroforestry (AF) on the Carbon (C) stock and Biodiversity conservation on the surroundings of Cyamudongo isolated rain forest and Ruhande Arboretum.
To understand this, the permanent sample plots (PSPs) were established mainly in the designed four transects of four km long originating on the boundary of the Cyamudongo isolated rain forest following the slope gradient ranging from 1286 to 2015 m asl. A total number of 73 PSPs were established in the Cyamudongo study area while 3 PSPs were established in the Ruhande AF plot. The Arc Map GIS 10.4 was used to design and map the sampling areas while GPS was used for localization of collected items. Statistical significance was analyzed through the R-software especially for wood and soil variables while for biodiversity indicator species, MVSP Software 3.0 was used to determine the Shannon Diversity indices and similarities among species.
In this study, I have obtained comprehensive results demonstrating that in all study areas, the various AF tree species contribute differently to C stock and C sequestration and the amount of C stored and removed from the atmosphere depends on different factors such as tree species, plantation density, growth stage, or the age of establishment, applied management practices, wood specific density (WSD), wood C concentration, and climatic conditions. The estimated quantity of sequestrated C for 2 years and 34 years AF species were 13.11 t C ha -1 yr-1 (equivalent to 48 t CO2 ha -1 yr-1) and 6.85 t ha-1 yr-1 (equivalent to 25.1 t CO2 ha -1 yr-1) in Cyamudongo and Ruhande respectively. The estimated quantity of C stored by the Ruhande AF plot is 232.94 t ha-1. In Cyamudongo, the overall C stored by the AF systems was 823 t ha-1 by both young tree species established by the Cyamudongo Project (35.84 t ha-1) and C stored by existed AF species before the existence of the Project (787.12 t ha-1). In all study areas, the Grevillea robusta was found to contribute more to overall stored C compared to other species under this study.
The tests revealed differences in terms of nutrient contents (C, N, C: N ratio, K, Na, Ca, and Mg) for various AF tree species of Cyamudongo and Ruhande study areas. The differences in terms of correlation for various variables of AF tree species in different study areas varied with tree species, age, stage of growth, and tree shape. By comparing the correlation coefficients for various tree variables for young and mature AF tree species, the results showed a high correlation variability for young species than mature or old species recorded in different environmental conditions of Cyamudongo and Ruhande study areas.
The recorded soil pH mean value across in Cyamudongo study area is 4.2, which is very strongly acidic. The tests revealed that the soil pH, C, C: N ratio, OM, NH4+, NO3-+NO2-, PO43-, and CEC were significantly (P < 0.05) different in various soil depths whereas the N was not statistically significant. The pH, N, C: N ratio, CEC, NH4+, PO43-, and Al3+ showed a significant difference across land uses whereas the C and NO3-+NO2- did not show any statistical difference. All tested chemical elements showed a statistical difference as far as altitude ranges are concerned. The only NH4+, PO43-, and CEC showed significant differences with time whereas all other remaining chemical elements did not show any statistical significance. The bulk density of soil was statistically different across land uses and altitude ranges. The soil pH was very strongly correlated with CEC, Mg, and Ca in cropland (CL) whereas it was strongly correlated in both AF and natural forest (NF) except for Mg, which was moderately correlated in AF. Furthermore, its correlation with K was strong in CL, moderate in AF while it was weak in NF. Finally, the pH correlation with Na was weak in both AF and CL whereas it was negligible in NF. The overall estimated soil C stock of the study area was 16848 t ha -1.
The sustainable AF practices changed significantly the frequency of reptiles, amphibians, and flowering plants while there was no statistical change observed on ferns with time. In terms of species richness, 16 flowering plants, 14 ferns, 5 amphibians, and 3 reptiles were recorded and monitored. These findings add to a growing body of literature on the impact of AF on the C stock, soil improvement, and Biodiversity. It is recommended that further researches should be undertaken for the contribution of other AF tree species to the C stock found in the agricultural landscape around all protected areas of Rwanda and the impact on them on the soil and biodiversity.
Human population pressure increased with the population growth around the NNP and Cyamudongo with disturbance impacts on the forests isolating populations into fragments and today, Cyamudongo natural forest is located a way at a distance of at least 8.5 km horizontal distance to Nyungwe main block with a surface area estimated at 300 ha. Under Cyamudongo project implementation, there was a need to understand how the flora diversity responded to human imposed challenges and to forest restoration initiatives. Three physiognomic landscapes forest were identified and considered for three phases of vegetation survey in Cyamudongo and related to the closest area of Nyungwe main block. In this study, 15 transects were laid in each physiognomic forest landscape and 10 and 5 plots were set respectively in Cyamudongo and Gasumo study area. In total, 315 phytosociological relevés were performed and the Braun-Blanquet methods used for three times vegetation surveys. Species life-forms and chorophyte were evaluated and tree species dbh and height have been measured. Data were subjected to different statistical analyses using different softwares such as PAST, R 3.5.2, and SPSS. The mapping was done using Arc GIS and the Multi-Spectral Remote Sensing used to find NDVI for the vegetation classification.
NDVI trends showed that there has been fluctuations in vegetation classifications of the studied area. In this study, 494 vascular plant species from 106 families were harbored in the study area and distributed differently among forest landscapes and study phases. Although, 43.54% were common to Cyamudongo and Gasumo landscapes while 48.54 % of species diversity were hold only by Cyamudongo and 7.92% confined to Gasumo and 12 in total were found new records for Rwanda while several others suspected require detailed research for identification showing how the flora diversity of Cyamudongo is of special interest and extremely important for discoveries.
The finding of the study on diversity indices, the PCA, CA and the Cluster analysis, all statistical analyses (MANOVA, ANOVA) and life form spectra unanimously showed that the anthropogenic disturbance shaped the vegetation cover, the floristic composition, the species diversity, the forest landscapes community structure, the life form spectrum and the phytoclimate of Cyamudongo and Gasumo forest landscapes. Although, the vegetation analysis couldn’t clearly identify communities and sub-communities at the initial and final vegetation surveys and cluster groups were heterogeneous as well as overlapping and species associations not clearly defined due to the high level of similarities in species composition among forest landscapes and vegetation surveys. The species diversity was found high in secondary forest and Gasumo landscape forest and low in the primary forest and the buffer zone of Cyamudongo and the disturbance with gaps openings was found to be associated to the species diversity with a seasonal variation. The patterns of dbh for the buffer zone and of the size classes of all landscapes with an inverted ‘J’ indicated a healthy regeneration in the forest landscapes and tree species explained a good regeneration and recruitment capacity. Different shapes in the pattern of dbh with respectively an inverted ‘J’, ‘J ‘and ‘U’ for the buffer zone, primary and together the secondary and Gasumo forest landscapes indicated differences in the landscapes health and degree of regeneration and recruitment capacity.
Findings from differents measuements showed at which extend human activities have shaped the flora diversity and structure of forest landcapes studied. For instance, disturbances due human activities were daily oberved and trees were logged by neighboring communities such as Batwa populations at Cyamudongo and local populations at Gasumo. Some species were evenly observed targeted for their barks such as Ocotea usambarensis, Parinari excelsa for medicines and many others for their wood quality, fire wood collection and for agricultural purposes.
In the period of Cyamudongo project implementation, important achievements included the increase of forest biomass and therefore the photosynthetic capacity and the evapotranspiration potential that influence the rainfall regime; the regulation of weather conditions and then species diversity; supporting local communities and limiting human activities; raising awareness on conservation and protection of biodiversity and improving of living conditions of neighboring populations by providing paid employment and so to restore to the Cyamudongo forest ecosystem functions. Moreover, Cyamudongo forest remains vulnerable as surrounded by local communities with a high population pressure relying on forest resources for its survival. Cyamudongo harbors a high level of endemism and is a small hotspot for biodiversity conservation. It is therefore recommended to strengthen conservation and protection measures and continue the support of local communities.
Due to their confinement to specific host plants or restricted habitat types, Auchenorrhyncha are suitable biological indicators to measure the quality of chalk grassland under different management practices for nature conservation. They can especially be used as a tool to assess the success of restoring chalk grassland on ex-arable land. One objective of this study was to identify the factors which most effectively conserve and enhance biological diversity of existing chalk grasslands or allow the creation of new areas of such species-rich grassland on ex-arable land. A second objective was to link Auchenorrhyncha communities to the different grassland communities occurring on chalk according to the NVC (National Vegetation Classification). Altogether 100 chalk grassland and arable reversion sites were sampled between 1998 and 2002. Some of the arable reversion sites had been under certain grazing or mowing regimes for up to ten years by 2002. Vegetation structure and composition were recorded, and Auchenorrhyncha were sampled three times during the summer of each year using a "vortis" suction sampler. Altogether 110 leafhopper species were recorded during the study. Two of the species, Kelisia occirrega and Psammotettix helvolus, although widespread within the area studied, had not previously been recognized as part of the British fauna. By displaying insect frequency and dominance as it is commonly done for vegetation communities, it was possible to classify preferential and differential species of distinct Auchenorrhyncha communities. The linking of the entomological data with vegetation communities defined by the NVC showed that different vegetation communities were reflected by distinct Auchenorrhyncha communities. Significant differences were observed down to the level of sub-communities. The data revealed a strong positive relationship between the diversity of leafhoppers species and the vegetation height. There was also a positive correlation between the species richness of Auchenorrhyncha and the diversity of plant species. In that context it is remarkable that there was no correlation between vegetation height and botanical diversity. There is a substantial decrease in Auchenorrhyncha species richness from unimproved grassland to improved grassland and arable reversion. The decline of typical chalk grassland and general dry grassland species is especially notable. Consequently, the number of stenotopic Auchenorrhyncha species which are confined to only a few habitat types, are drastically reduced with the improvement of chalk grassland. Improved grassland and arable reversion fields are almost exclusively inhabited by common habitat generalists. The decrease in typical chalk grassland plants due to improvement is mirrored in the decline of Auchenorrhyncha species, which rely monophagously or oligophagously on specific host plants. But even where suitable host plants re-colonize arable reversion sites quickly, there is a considerable delay before leafhoppers follow. That becomes especially obvious with polyphagous leafhoppers like Turrutus socialis or Mocydia crocea, which occur on improved grassland or arable reversion sites only in low frequency and abundance, despite wide appearance or even increased dominance of their host plants. These species can be considered as the most suitable indicators to measure success or failure of long term grassland restoration. A time period of ten years is not sufficient to restore species-rich invertebrate communities on grassland, even if the flora indicates an early success.
A taxonomic revision of the genus Pteris in tropical Africa revealed 26 species. An identification key to the species is provided. Morphological characters were used to prepare a cladistic analysis of the relevant taxa. Each species was evaluated concerning the IUCN red list status. Only Pteris mkomaziensis was considered as Near Threatened, and all other species only as Least Concern. An inventory of the ferns of Kakamega Forest / Kenya and Budongo Forest / Uganda revealed 85 species in Kakamega and 66 species in Budongo. Life form spectra were analysed and the ferns were studied for their value for bioindication.
Taxonomy and Systematics of Spiny-Backed Treefrogs, Genus Osteocephalus (Amphibia: Anura: Hylidae)
(2015)
The pan-Amazonian treefrog genus Ostecephalus is poorly understood both on a taxonomic and phylogenetic level. The status of several frogs already or not yet referred to the genus is unclear and the relationships among the genus and with respect to related genera is not understood. In this work O. cabrerai (Cochran and Goin, 1970) from Colombia and Peru is redescribed and O. festae (Peracca, 1904) from the foothills of the Andes in Ecuador is revalidated. Hyla inframaculata Boulenger, 1882, from the lower Amazon in Brazil, is reallocated to Osteocephalus and O. elkejungingerae (Henle, 1981) from the Andean foothills in Peru is shown to be a synonym of Hyla mimetica (Melin, 1941), the valid name being O. mimeticus. Hyla vilarsi Melin, 1941 is considered a valid species in the genus Osteocephalus and revalidated from the synonymies of several other frogs. Three new species, O. castaneicola from northern Bolivia and southern Peru, O. duellmani from a sub-Andean mountain range in southern Ecuador, and O. camufatus from central Amazonian Brazil, are described. A phylogenetic analysis based on up to nine mitochondrial genes and one nuclear one reveals the paraphyly of the genus as previously understood with respect to the genus Tepuihyla. A new taxonomy is proposed, securing the monophyly of Osteocephalus and Tepuihyla by rearranging and redefining the content of both genera. A new genus, Dryaderces, is erected for the sister group of Osteocephalus. The colouration of newly metamorphosed individuals is proposed as a morphological synapomorphy for Osteocephalus. Five monophyletic species groups within Osteocephalus are recognized, three species of Osteocephalus (O. germani, O.rnphasmatus, O. vilmae) and three species of Tepuihyla (T. celsae, T. galani, T. talbergae) synonymized and three species (Hyla helenae to Osteocephalus, O.rnexophthalmus to Tepuihyla and O. pearsoni to Dryaderces gen. n.) reallocated. Furthermore, nine putative new species are flagged (an increase to 138% of the current diversity), an indication that species numbers are largely underestimated, with most hidden diversity centred on widespread and polymorphic nominal species. The evolutionary origin of breeding strategies within Osteocephalus is discussed in the light of this new phylogeny and a novel type of amplexus (gular amplexus) is described.
Microbial pollution of surface waters poses substantial risks for public health, amongst others during recreational use. Microbial pollution was studied at selected sampling sites in rivers Rhine, Moselle and Lahn (Germany) on the basis of commonly used fecal indicator organisms (FIO) indicating bacterial (Escherichia coli, intestinal enterococci) and viral (somatic coliphages) fecal contamination. In addition, blaCTX-Mantibiotic resistance genes (ARG) were quantified at twosites in river Lahn and were used as markers for tracking the spread of antibiotic resistance in the aquatic environment. The impact of changes in climate-related parameters on FIO was examined by studying monitoring results of contrasting flow conditions at rivers Rhine and Moselle. Analyses at all studied river sites clearly indicate that high discharge and precipitation enhance the influx of FIO, ARG and thus potentially (antibiotic resistant) pathogens into rivers. In contrast, a decrease in hygienic microbial pollution was observed under high solar irradiation and increasing water temperatures. Based on identified contributing key factors, multiple linear regression (MLR) models for five sites at a stretch of river Lahn were established that allow a timely assessment of fecal indicator abundances. An interaction between abiotic and biotic factors (i.e. enhanced grazing pressure) considerably contributed to the formation of seasonal patterns among FIO abundances. This was enhanced during extraordinary low flow conditions in rivers with pronounced trophic interactions, clearly hampering a transfer of model approaches between rivers of different biological and hydrological characteristics. Bacterial indicatorswere stronger influenced by grazing pressure than phages. Hence, bacterial indicators alone do not sufficiently describe viral pollution in rivers. BlaCTX-Mgenes were omnipresent in Lahn River water and corresponded to distribution patterns of FIO, indicating fecal sources. Agriculture and waste watertreatment plant effluents contributed to ARG loads and participants in non-bathing water sports were found to be at risk of ingesting antibiotic resistant bacteria (ARB) including ARG, bearing the risk of infection or colonization. Results of the present study highlight the need to be aware of such risks not only in designated bathing waters. ARG abundance at both riverine sampling sites could largely be explained by E. coliabundance and may thus also be incorporated into multiple regression models using E. colispecific environmental predictors. It can be expected that the frequency of short-term microbial pollution events will increase over the next decades due to climate change. Several challenges were identified with regard to the implementation of early warning systems to protect the public from exposure to pathogens in rivers. Most importantly, the concept of the Bathing Water Directive (Directive 2006/7/EC) itself as well as the lack of harmonization in the regulatory framework at European Union (EU) level are major drawbacks and require future adjustments to reliably manage health risks related to microbial water pollution in waters used in multifunctional ways.
The first group that was revised within my study is Ochralea Clark, 1865 (Hazmi & Wagner 2010a). I have checked the type specimen of most species that were originally described in Ochralea and there is no doubt that this genus is clearly distinct from Monolepta. Weise (1924) has synonymised Galeruca nigripes (Olivier, 1808) with O. nigricornis Clark, 1865 and the valid name of the species is O. nigripes (Olivier, 1808). Out of ten species originally described in this genus, only this species remain valid and O. pectoralis is a new synonym of O. nigripes. Additionally, Monolepta wangkliana Mohamedsaid, 2000 is very closely related to O. nigripes and need to be transferred to Ochralea. The second genus where the revision is still published is Arcastes Baly, 1865 (Hazmi & Wagner 2010b). I have checked the genitalic characters of A. biplagiata, and most of the type species of other Arcastes. Arcastes biplagiata possesses a peculiar shape of the median lobe and asymmetrically arranged endophallic structures. These peculiar characters are very useful to delimit this genus from the others. Therefore, only three valid species remain in Arcastes, while two new synonyms are found and fourrnother species need to be transferred to other genera. While checking the genitalic characteristics of type species of Arcastes sanguinea, thernmedian lobe as well as the spermatheca of this species possesses strong differences to A. biplagiata. The species was redescribed and transferred in a monotypic new genus Rubrarcastes Hazmi & Wagner, 2010c. The fourth genus that was already revised is Neolepta Jacoby, 1884. It was originally described on base of only two species by that time, N. biplagiata and N. fulvipennis. Jacoby has not designated a type species of the genus, and Maulik (1936) did it later, with the designation of N. biplagiata. Jacoby in his original description has only commented that Neolepta is very close and similar to Monolepta Chevrolat, 1837 and Candezea Chapuis, 1879. Subsequent authors have described further eight species, and transferred one species from Luperodes to it, summing up the total number of eleven described species in Neolepta. I have checked the genitalic characters of the type, N. biplagiata and have found out that the median lobe is not incised apically and stronger sclerotised ventral carinae with an apical hook close to the apex occur. Out of all described species, only two are closely related to the genero-type, N. sumatrensis (Jacoby, 1884) new combination and N. quadriplagiata Jacoby, 1886 that will remain in this group after the revision. All other species need to be transferred to other genera, including the newly described Paraneolepta and Orthoneolepta. The last distinct paper of this thesis presented the results on Monolepta Chevrolat, 1837. The massive number of Monolepta from the entire Oriental Region, with about 260 described species names is a more long-life project and not practicable within a PhD-study. Thus I have focused on the species of Monolepta known from the Sundaland area in this work. A comprehensive revision including the study of the primary types of the described species, has never been done for Monolepta from this sub-region, while new species have also been described in the last decade (e. g. Mohamedsaid 1993, 1997, 1998, 1999, 2000a,b, 2001, 2002, 2005).
On base of the most current species lists of Mohamedsaid (2001, 2004, 2005) and Kimoto (1990), the number of valid species described from this region is about 72. After my revision, only thirteen valid species can remain in Monolepta in the sense of the generotype M. bioculata (Wagner 2007), while seven species have been found as new synonyms, three have been already transferred to other genera and further 49 species need to be transferred to other genera.
Amphibian populations are declining worldwide for multiple reasons such as habitat destruction and climate change. An example for an endangered European amphibian is the yellow-bellied toad Bombina variegata. Populations have been declining for decades, particularly at the northern and western range margin. One of the extant northern range centres is the Westerwald region in Rhineland-Palatinate, Germany. To implement informed conservation activities on this threatened species, knowledge of its life-history strategy is crucial. This study therefore focused on different developmental stages to test predictions of life-history theory. It addressed (1) developmental, (2) demographic and (3) genetic issues of Bombina variegata as a model organism: (1) Carry-over effects from larval environment to terrestrial stages and associated vulnerability to predators were investigated using mesocosm approaches, fitness tests and predation trials. (2) The dynamics and demography of B. variegata populations were studied applying a capture-mark-recapture analysis and skeletochronology. The study was complemented through (3) an analysis of genetic diversity and structuring of B. variegata populations using 10 microsatellite loci. In order to reveal general patterns and characteristics among B. variegata populations, the study focused on three geographical scales: local (i.e. a former military training area), regional (i.e. the Westerwald region) and continental scale (i.e. the geographical range of B. variegata). The study revealed carry-over effects of larval environment on metamorph phenotype and behaviour causing variation in fitness in the early terrestrial stage of B. variegata. Metamorph size and condition are crucial factors for survival, as small-sized individuals were particularly prone to predator attacks. Yellow-bellied toads show a remarkable fast-slow continuum of the life-history trait longevity. A populations’ position within this continuum may be determined by local environmental stochasticity, i.e. an extrinsic source of variation, and the efficiency of chemical antipredator protection, i.e. an intrinsic source of variation. Extreme longevity seems to be an exception in B. variegata. Senescence was absent in this study. Weather variability affected reproductive success and thus population dynamics. The dispersal potential was low and short-term fragmentation of populations caused significant genetic differentiation at the local scale. Long-term isolation resulted in increased genetic distance at the regional scale. At the continental scale, populations inhabiting the marginal regions were deeply structured with reduced allelic richness. As consequence of environmental changes, short-lived and isolated B. variegata populations at the range margin may face an increased risk of extinction. Conservation measures should thus improve the connectivity among local populations and reinforce annual reproductive success. Further research on the intraspecific variation in B. variegata skin toxins is required to reveal potential effects on palatability and thus longevity.
Ecological assessment approaches based on benthic invertebrates in Euphrates tributaries in Turkey
(2019)
Sustainable water management requires methods for assessing ecological stream quality. Many years of limnological research are needed to provide a basis for developing such methods. However, research of this kind is still lacking in Turkey. Therefore, the aim of this doctoral thesis was to provide basic research in the field of aquatic ecology and to present methods for the assessment of ecological stream quality based on benthic invertebrates. For this purpose, I selected 17 tributaries of the Euphrates with a similar typology/water order and varying levels of pollution or not affected by pollution at all. The characterisation of the natural mountain streams was the first important step in the analysis of ecological quality. Based on community indices, I found that the five selected streams had a very good ecological status. I also compared the different biological indications, collected on two occasions ¬– once in spring (May) and once in autumn (September) – to determine the optimal sampling time. The macroinvertebrate composition differed considerably between the two seasons, with the number of taxa and Shannon index being significantly higher in autumn than in spring. In the final step, I examined the basal resources of the macroinvertebrates in the reference streams with an isotope analysis. I found that FPOM and biofilm were the most relevant basal resources of benthic invertebrates. Subsequently, based on the similarity of their community structures, I divided the 17 streams into three quality classes, supported by four community indices (EPT [%], EPTCBO [%], number of individuals, evenness). In this process, 23 taxa were identified as indicators for the three quality classes. In the next step, I presented two new or adapted indices for the assessment of quality class. Firstly, I adapted the Hindu Kush-Himalaya biotic index to the catchment area of the Euphrates and created a new, ecoregion-specific score list (Euph-Scores) for 93 taxa. The weighted ASPT values, which were renamed the Euphrates Biotic Score (EUPHbios) in this study, showed sharper differentiations of quality classes compared to the other considered ASPT values. Thus, this modified index has proved to be very effective and easy to implement in practical applications. As a second biological index, I suggested the proportion of habitat specialists. To calculate this index, the habitat preferences of the 20 most common benthic invertebrates were identified using the new habitat score. The proportion of habitat specialists differed significantly among the three quality classes with higher values in natural streams than in polluted streams. The methods and results presented in this doctoral thesis can be used in a multi-metric index for a Turkish assessment programme.
Because silver nanoparticles (Ag NPs) are broadly applied in consumer products, their leaching will result in the continuous release of Ag NPs into the natural aquatic environment. Therefore, bacterial biofilms, as the prominent life form of microorganisms in the aquatic environment, are most likely confronted with Ag NPs as a pollutant stressor. Notwithstanding the significant ecological relevance of bacterial biofilms in aquatic systems, and though Ag NPs are expected to accumulate within these biofilms in the environment, the knowledge on the environmental and ecological impact of Ag NPs, is still lagging behind the industrial growth of nanotechnology. Consequently, aim of this thesis was to perform effect assessment of Ag NP exposure on bacterial biofilms with ambient Ag NPs concentrations and under environmentally relevant conditions. Therefore, a comprehensive set of methods was applied in this work to study if and how Ag NPs of two different sizes (30 and 70 nm) affect bacterial biofilms i.e. both monospecies biofilms and freshwater biofilms in environmentally relevant concentrations (600 - 2400 µg l-1). Within the first part of this work, a newly developed assay to test the mechanical stability of
monospecies biofilms of the freshwater model bacterium Aquabacterium citratiphilum was validated. In the first study, to investigate the impact of Ag NPs on the mechanical stability of bacterial biofilms, sublethal effects on the mechanical stability of the biofilms were observed with negative implications for biostabilization. Furthermore, as it is still challenging to monitor the ecotoxicity of Ag NPs in natural freshwater environments, a mesocosm study was performed in this work to provide the possibility for the detailed investigation of effects of Ag NPs on freshwater biofilms under realistic environmental conditions. By applying several approaches to analyze biofilms as a whole in response to Ag NP treatment, insights into the resilience of bacterial freshwater biofilms were obtained. However, as revealed by t-RFLP fingerprinting combined with phylogenetic studies based on the 16S gene, a shift in the bacterial community composition, where Ag NP-sensitive bacteria were replaced by more Ag NP-tolerant species with enhanced adaptability towards Ag NP stress was determined. This shift within the bacterial community may be associated with potential detrimental effects on the functioning of these biofilms with respect to nutrient loads, transformation and/or degradation of pollutants, and biostabilization. Overall, bringing together the key findings of this thesis, 4 general effect mechanisms of Ag NP treatment have been identified, which can be extrapolated to natural freshwater biofilms i.e. (i) the identification of Comamonadaceae as Ag NP-tolerant, (ii) a particular resilient behaviour of the biofilms, (iii) the two applied size fractions of Ag NPs exhibited similar effects independent of their sizes and their synthesis method, and (iv) bacterial biofilms show a high uptake capacity for Ag NPs, which indicates cumulative enrichment.
Nandi forests (South and North Nandi forests) are situated in the Rift Valley Province of Kenya very close to Kakamega forest. From previous documents it has been seen that Kakamega and Nandi forests were connected to each other forming one big "U" shaped forest block till the beginnings of 1900s. Due to human pressures, currently there are three different forests form the previous one block forest. Although they were one forest, information on Nandi forests is very scanty when it is compared to that of Kakamega forest. The species composition and diversity as well as plant communities and population structure of Nandi forests have not been studied. Information is not available about the similarity status of South and North Nandi forests. Furthermore the natural regeneration potential (seedling bank) of these forests is not well studied and documented. Hence this study aims to fill these gaps.
In this study totally 76 quadrates (49 from South Nandi and 27 from North Nandi) were used to collect data. In the South Nandi forests 27 of the quadrates were laid in the better side of the forest (at Kobujoi) and the remaining 22 were in the heavily disturbed part of this forest (Bonjoge). The quadrates were arranged on transects that have one to one and half km which were parallel to the slope. The distance between the quadrates was 100 meter and transects are 500 m apart. The size of the main quadrate was 400 m2 (20 X 20 m) which also had five small plots (3 X 3 m) distributed on the four corners and in the center. Each woody plants (climbers, shrubs and trees) having more than one meter and greater than two centimeter diameter at breast height (dbh) were measured and recorded. Seedlings and herbaceous plants were sampled in the smaller plots. Individual plants were identified at species level and when it was not possible to identify in the field voucher specimen were prepared and latter identified at the East African Herbarium, National Museum of Kenya, and Nairobi. Clustering and ordination were performed using PC-ORD and CANOCO ecological softwares, respectively. For both clustering and ordination abundance data of the species was used. Shannon diversity index and evenness were computed using PC-ORD while similarity indices, Fisher alpha, rarefaction, species richness estimation (nonparametric species richness estimators) were conducted using EstimateS. Indicator species analysis was undertaken using PC-ORD. Basal area and height class distribution at forests level or site level (Bonjoge and Kobujoi) and diameter (dbh) class distribution for selected trees species were performed to evaluate population structure.
Furthermore importance value (IV) of woody plant species was calculated. SPSS version 16 was used to undertake both parametric (when data assume normal distribution) and nonparametric (when data are not assuming normal distribution) comparison of means, correlation and regression analysis.
In this study totally 321 vascular plant species comprising 92 families and 243 genera were identified in Nandi forests (both South and North Nandi forests). In South Nandi forest 253 plant species form 82 families and 201 genera were recorded while in North Nandi 181 species comprising 67 families and 155 genera were recorded. Jackknife second order estimators gave the highest species richness estimate for both South and North Nandi forests i.e. 284 and 209, respectively. In the case of highly disturbed and less disturbed parts of South Nandi forest 138 and 172 vascular plant species were recorded, respectively. Asteraceae, Rubiaceae and Euphorbiaceae are the top three species rich families of Nandi forests. In terms of different diversity measures (i.e. alpha and beta diversity, Fisher alpha, Shannon diversity and evenness indices) South Nandi is more diverse than North Nandi forest. Sörensen and Jaccard (classic) as well as their respective abundance based similarities showed that there is a low species similarity between South and Nandi forests. The cluster analysis resulted in three different plant communities and this result is supported by the ordination result.
South and North Nandi forest has inverted "J" height class distribution showing that larger proportion of woody plant individuals are found in the lower height classes. Similar pattern is observed when the diameters of all woody plants were considered together. However, different diameter class distributions (seven types) were identified when selected tree species were analyzed separately. It has been observed that the basal area of South Nandi forest is significantly lower than that of North Nandi forest (Mann-Whitney U =358, p < 0.001). Similarly Bonjoge has significantly lower basal area (t-value=3.77, p<0.01) than that of Kobujoi. Number of woody plat seedlings in South Nandi forest is significantly higher than that of North Nandi (Mann-Whitney U = 362.5, p<0.001). In the same way Bonjoge has significantly smaller number of ssedlings than Kobujoi (t-value 4.24, p<0.001). Most of species in both forests are able to resprout from stumps after physical damage; hence this helps the regeneration of the forests in addition to seedling banks. This study enables to fill some of the information gaps about Nandi forests especially of floristic composition, population structure, natural regeneration and human impacts on this ecosystem.
Cultural eutrophication due to excessive inputs of nutrients seriously threatens aquatic ecosystems worldwide and is one of the major anthropogenic stressors on aquatic biota in European rivers. In streams and shallow rivers, its effects include excessive periphyton growth, which causes biological clogging and thereby oxygen depletion in the hyporheic zone. The result is a serious degradation of habitat quality for benthic invertebrates as well as for the eggs and larvae of gravel-spawning fish. Unlike in standing waters, efficient tools for controlling eutrophication in rivers are lacking. However, top-down control of the food-web by manipulating fish stocks, similar to the biomanipulation successfully applied in lakes, offers a promising approach to mitigating the effects of eutrophication in shallow rivers, especially those in which major reductions in nutrient inputs are not feasible. The overall aim of this thesis was to assess the potential for top-down control by two large cypriniform fish, the common nase (Chondrostoma nasus), the only obligate herbivorous fish species in European rivers, and the omnivorous European chub (Squalius cephalus), to mitigate the effects of eutrophication in medium-sized rivers. I therefore conducted field experiments on different spatial and temporal scales in the hyporhithral zone of a eutrophic gravel-bed river. Generally, the results of those experiments revealed the crucial role of fish-mediated top-down effects in river food webs. In a 4-year reach-scale experiment, the key contribution of my thesis, the enhancement of fish densities significantly increased both oxygen availability and water exchange in the upper layer of the hyporheic zone, even though the top-down effects of the fish on periphyton biomass were relatively small. These findings were supported by those of a 4-week mesocosm experiment, which also provided insights into the mechanisms underlying the mitigation of eutrophication effects by nase and chub. The top-down effects of both fish species reduced hyporheic oxygen depletion, suggesting a reduction of biological clogging. The positive effects of herbivorous nase on hyporheic oxygen availability could be attributed to benthic grazing, whereas the reduction of hyporheic oxygen depletion in the presence of omnivorous chub was best explained by the enhanced bioturbation induced by the fish’s benthic foraging. Overall, the results of my thesis demonstrate that biomanipulation achieved by enhancing herbivorous and omnivorous fish stocks can mitigate the effects of eutrophication in medium-sized European rivers. The results may be the first step towards the establishment of biomanipulation as a supportive management tool for eutrophication control in running waters and therefore as a strategy to preserve aquatic biodiversity.
The ongoing loss of species is a global threat to biodiversity, affecting ecosystems worldwide. This also concerns arthropods such as insects and spiders, which are especially endangered in agricultural ecosystems. Here, one of the main causing factors is management intensification. In areas with a high proportion of traditionally managed grassland, extensive hay meadows that are cut only once per year can still hold high levels of biodiversity, but are threatened by conversion into highly productive silage grassland. The Westerwald mountain range, western Germany, is such a region. In this thesis, I compare the local diversity of bees, beetles, hoverflies, leafhoppers, and spiders of five grassland management regimes along a gradient of land-use intensity. These comprise naturally occurring grassland fallows, three types of traditionally managed hay meadows, and intensively used silage grassland. By using three different sampling methods, I recorded ground-dwelling, flower-visiting, and vegetation-dwelling species. The results show that in most cases species richness and diversity are highest on fallows, whereas variation among different managed grassland types is very low. Also, for most sampled taxa, fallows harbour the most distinct species assemblages, while that of other management regimes are largely overlapping. Management has the largest effect on species composition, whereas environmental parameters are of minor importance. Long-term grassland fallows seem to be highly valuable for arthropod conservation, even in a landscape with a low overall land-use intensity, providing structural heterogeneity. In conclusion, such fallows should be subsidized agri-environmental schemes, to preserve insect and spider diversity.