This thesis was motivated by the need to advance the knowledge on the variability and dynamics of energy fluxes in lakes and reservoirs, as well as about the physical processes that regulate the fluxes at both the air and water side of the air-water interface. In the first part, I re-examine how mechanical energy, resulting from its major source – the vertical wind energy flux - distributes into the various types of water motions, including turbulent flows and surface and internal waves. Although only a small fraction of the wind energy flux from the atmosphere is transferred to the water, it is crucial for physical, biogeochemical and ecological processes in lentic ecosystems. Based on extensive air- and water-side measurements collected at two small water bodies (< 10 km2), we estimated the energy fluxes and energy content in surface and in internal waves. Overall, the estimated energy fluxes and energy content agree well with results reported for larger water bodies, suggesting that the energetics driving the water motions in enclosed basins is similar, independently of the basin size. Our findings highlight the importance of the surface waves that receive the largest fraction of the wind energy flux, which strongly nonlinearly increases for wind speeds exceeding 3 m s-1. We found that the existing parameterization of the wave height as a function of wind speed and fetch length did not reproduce the measured wave amplitude in lakes. On average, the highest energy content was observed in basin-scale internal waves, together with high-frequency internal waves exhibiting seasonal variability and varies among the aquatic systems. During our analysis, we discovered the diurnal variability of the energy dissipation rates in the studied lake, suggesting biogenic turbulence generation, which appears to be a widespread phenomenon in lakes and reservoirs. In the second part of the thesis, I addressed current knowledge gaps related to the bulk transfer coefficients (also known as the drag coefficient, the Stanton number and the Dalton number), which are of a particular importance for the bulk estimation of the surface turbulent fluxes of momentum, sensible and latent heat in the atmospheric boundary layer. Their inaccurate representation may lead to significant errors in flux estimates, affecting, for example, the weather and climate predictions or estimations of the near-surface current velocities in lake hydrodynamic models. Although the bulk transfer coefficients have been extensively studied over the past several decades (mainly in marine and large-lake environments), there has been no systematic analysis of measurements obtained at lakes of different size. A significant increase of the transfer coefficients at low wind speeds (< 3 m s-1) has been observed in several studies, but, to date, it has remained unexplained. We evaluated the bulk transfer coefficients using flux measurements from 31 lakes and reservoirs. The estimates were generally within the range reported in previous studies for large lakes and oceans. All transfer coefficients increased substantially at low wind speeds, which was found to be associated with the presence of gusts and capillary waves (except the Dalton number). We found that the Stanton number is systematically higher than the Dalton number. This challenges the assumption made in the Bowen-ratio method, which is widely used for estimating evaporation rates from micrometeorological measurements. We found that the variability of the transfer coefficients among the lakes could be associated with lake surface area. In flux parameterizations at lake surfaces, it is recommended to consider variations in the drag coefficient and the Stanton number due to wind gustiness and capillary wave roughness while the Dalton number could be considered as constant at all wind speeds. In the third part of the thesis, I address the key drivers of the near-surface turbulence that control the gas exchange in a large regulated river. As all inland waters, rivers are an important natural source of greenhouse gases. The effects of the widespread alteration and regulation of river flow for human demands on gas exchange is largely unknown. In particular, the near-surface turbulence in regulated rivers has been rarely measured and its drivers have not been identified. While in lakes and reservoirs, near-surface turbulence is mainly related to atmospheric forcing, in shallow rivers and streams it is generated by bottom friction of the gravity-forced flow. The studied large regulated river represents a transition between these two cases. Atmospheric forcing and gravity were the dominant drivers of the near-surface turbulence for a similar fraction of the measurement period. Based on validated scalings, we derived a simple model for estimating the relative contributions of wind and bottom friction to near-surface turbulence in lotic ecosystems with different flow depths. Large diel variability in the near-surface energy dissipation rates due to flow regulation leads to the same variability in gas exchange. This suggests that estimates of gas fluxes from rivers are biased by measurements performed predominantly during daytime. In addition, the novelty in all the analyses described above is the use of the turbulent surface fluxes measured directly by the eddy-covariance technique – at the moment of writing, the most advanced method. Overall, this thesis is of a potential interest for a broad range of scientific disciplines, including limnology, micrometeorology and open channel hydraulics.

The growing numbers of breeding rooks (Corvus frugilegus) in the city of Landau (Rhineland- Palatinate, Germany) increase the potential for conflict between rooks and humans, which is mainly associated with noise and faeces. Therefore, the aim of this work is a better understanding of the breeding tree selection of the rook in order to develop options for action and management in the future. Part I of this thesis provides general background information on the rook and includes mapping of the rookeries in the Anterior Palatinate and South Palatinate including Landau in the year 2020. That mapping revealed that the number of rural colonies has decreased, while the number of urban colonies has increased in the study area in the last few years. In line with current literature, tree species and tree size were important criteria for breeding tree selection. However, the mapping showed that additional factors must be important as well. Therefore, as rooks seem to often breed along traffic axes, Part II of this thesis examines how temperature, artificial light and noise, which are all linked to traffic axes, affect the breeding tree selection of the rook in the city of Landau. The following three hypotheses are developed: (1) manually selected breeding trees (Bm) have a warmer microclimate than manually selected non-breeding trees (Nm) or randomly selected non-breeding trees (Nr), (2) Bm are exposed to a higher light level than Nm or Nr and (3) Bm are exposed to a higher noise level than Nm or Nr. To test these hypotheses, 15 Bm, 13 Nm and 16 Nr are investigated. The results show that Bm were exposed to more noise than both types of non-breeding trees (μBm, noise = 36.52481 dB, μNm, noise = 31.27229 dB, μNr, noise = 29.17417 dB) where the difference between Bm and Nr was significant. In addition, there was a tendency for Bm to be exposed to less light (μBm, light = 0.356 lx) than Nm (μNm, light = 0.4107692 lx) and significantly less light than Nr (μNr, light = 1.995 lx), while temperature did not differ between the groups (μBm, temp = 16.90549 °C, μNm, temp = 16.93118 °C, μNr, temp = 17.28639 °C). This study shows for the first time that rooks prefer trees which are exposed to low light levels and high noise levels, i.e. more intense traffic noise, for breeding. It can only be speculated that the cause of this is lower enemy pressure at such sites. The fact that temperature does not seem to have any influence on breeding tree selection may be due to only small temperature differences at nest height, which might be compensated by breeding behaviour. Consequently, in the long term one management approach could be to divert traffic from inner-city areas, especially schools and hospitals, to bypasses. If tree genera suitable for rooks, such as plane trees, are planted along the bypasses, those sites could provide suitable alternative habitats to inner-city breeding locations, which become less attractive for breeding due to noise reduction. In the short term in addition to locally implemented repellent measures the most effective approach is to strengthen rook acceptance among the population. However, further research is needed to verify the results of this thesis and to gain further insights into rook breeding site selection in order to develop effective management measures.

Vertebrate biodiversity is rapidly decreasing worldwide with amphibians being the most endangered vertebrate group. In the EU, 21 of 89 amphibian species are recognized as being endangered. The intensively used European agricultural landscape is one of the major causes for these declines. As agriculture represents an essential habitat for amphibians, exposure to pesticides can have adverse effects on amphibian populations. Currently, the European risk assessment of pesticides for vertebrates requires specific approaches for fish regarding aquatic vertebrate toxicity and birds as well as mammals for terrestrial vertebrate toxicity but does not address the unique characteristics of amphibians. Therefore, the overall goal of this thesis was to investigate the ecotoxicological effects of pesticides on Central European anuran amphibians. For this, effects on aquatic and terrestrial amphibian life stages as well as on reproduction were investigated. Then, in anticipation of a risk assessment of pesticides for amphibians, this thesis discussed potential regulatory risk assessment approaches. For the investigated pesticides and amphibian species, it was observed that the acute aquatic toxicity of pesticides can be addressed using the existing aquatic risk assessment approach based on fish toxicity data. However, lethal as well as sublethal effects were observed in terrestrial juveniles after dermal exposure to environmentally realistic pesticide concentrations, which cannot be covered using an existing risk assessment approach. Therefore, pesticides should also be evaluated for potential terrestrial toxicity using risk assessment tools before approval. Additionally, effects of co-formulants and adjuvants of pesticides need specific consideration in a future risk assessment as they can increase toxicity of pesticides to aquatic and terrestrial amphibian stages. The chronic duration of combined aquatic and terrestrial exposure was shown to affect amphibian reproduction. Currently, such effects cannot be captured by the existing risk assessment as data involving field scenarios analysing effects of multiple pesticides on amphibian reproduction are too rare to allow comparison to data of other terrestrial vertebrates such as birds and mammals. In the light of these findings, future research should not only address acute and lethal effects, but also chronic and sublethal effects on a population level. As pesticide exposure can adversely affect amphibian populations, their application should be considered even more carefully to avoid further amphibian declines. Overall, this thesis emphasizes the urgent need for a protective pesticide risk assessment for amphibians to preserve and promote stable amphibian populations in agricultural landscapes.

Stream ecosystems are one of the most threatened ecosystems worldwide due to their exposure to diverse anthropogenic stressors. Pesticides appear to be the most relevant stressor for agricultural streams. Due to the current mismatch of modelled and measured pesticide concentrations, monitoring is necessary to inform risk assessment or improve future pesticide approvals. Knowing if biotic stress responses are similar across large scales and long time frames could ultimately help in estimating protective stressor thresholds. This thesis starts with an overview of entry pathways of pesticides to streams as well as the framework of current pesticide monitoring and gives an outline of the objectives of the thesis. In chapter 2, routine monitoring data based on grab sampling from several countries is analysed to identify the most frequently occurring pesticide mixtures. These mixtures are comprised of relatively low numbers of pesticides, of which herbicides are dominating. The detected pesticide mixtures differ between regions and countries, due to differences in the spectrum of analysed compounds and limits of quantification. Current routine monitoring does not include sampling during pesticide peaks associated with heavy rainfall events which likely influences the detected pesticide mixtures. In chapter 3, sampling rates of 42 organic pesticides for passive sampling are provided together with recommendations for the monitoring of field-relevant peaks. Using this information, in chapter 4 a pesticide gradient is established in an Eastern European region where agricultural intensity adjacent to sampled streams ranges from low to high. In contrast to current routine monitoring, rainfall events were sampled and a magnitude of pesticides were analysed. This led to the simultaneous detection of numerous pesticides of which one to three drive the pesticide toxicity. The toxicity, however, showed no relationship to the agricultural intensity. Using microcosms, the stress responses of fungal communities, the hyphomycetes, and the related ecosystem function of leaf decomposition, is investigated in chapter 5. Effects of a field-relevant fungicide mixture are examined across three biogeographical regions for three consecutive cycles of microbial leaf colonisation and decomposition. Despite different initial communities, stress responses as well as recoveries were similar across biogeographical regions, indicating a general pattern. Overall, this thesis contributes to an improved understanding of occurrence and concentrations of pesticides mixtures in streams, their monitoring and impact on an ecosystem function. We showed that estimated pesticide toxicities reach levels that affect non-target organisms and thereby potentially whole ecosystems. Routine monitoring, however, likely underestimates the threat by pesticides. Effects leading to a loss in biodiversity or functions in streams ecosystems can be reduced by reassessing approved pesticides with ongoing targeted monitoring and increased knowledge of effects caused by these pesticides.

The loss of biodiversity is recognised on a global scale and also in the anthropogenic landscapes used for agriculture, now covering almost 50% of the global terrestrial land surface. In agriculture pesticides, biologically active chemicals are deliberately distributed to control pests, disease and weeds in the cropped areas. The quantification of remaining semi-naturals structures such as field margins and hedges is a prerequisite to understand the impact of pesticides on biodiversity, since these structures represent habitats for many organisms in agricultural landscapes. The presence of organisms in these habitats and crops is required to obtain an estimate of their potential pesticide exposure. In this text I provide studies on animal groups so far not addressed in risk assessment procedures for the regulation of pesticides such as amphibians, moths and bats. For all groups it becomes apparent that they are present in agricultural landscapes and potentially coincide with pesticide applications indicating a risk. Risk quantification also requires data on the sensitivity of organisms and here data for plants, amphibians and bees are presented. Effects translating to community level were studied for herbicide, insecticide and fertiliser effects in a natural system. After three years the treatments resulted in simplified plant communities with lower species numbers and a reduction in flowering plants. This reduction of flowers is used as an example for an indirect effect and was especially obvious for the effect of an herbicide on the common buttercup. Sublethal herbicide effects for a plant translated in an impact on feeding caterpillars, indicating a reduction in food quality. Insecticide inputs realistic for field margins also reduced moth pollination of white champion flowers by 30%. These indirect effects by distortions of food web characteristics are playing a critical role to understand declines in organism groups, however so far are not accounted for in pesticide risk assessment schemes. The current intense use of pesticides in agriculture and their inherent toxicity may lead to a chemical landscape fragmentation, where populations may not be connected anymore. Source-sink dynamics are important ecological processes and as a final result not only population size but also genetic population structure might be affected. Including potential pesticide impacts as costs in a model for amphibians migrating to breeding ponds in vineyards in Rhineland-Palatinate indicated the isolation of investigated populations. A first validation by analyzing the population structure of the European common frog confirmed the model prediction for some sites. For the regulation of pesticides in Europe a risk assessment is required and for the organisms of the terrestrial habitat a multitude of guidance documents is in place or is recently developed or improved. The results of the presented research indicate that wild plants and especially their reproductive flower stage are highly sensitive and risks are underestimated. Population recovery of arthropods needs a reevaluation at landscape scale and the addition of amphibian risk assessment in regulation procedures is suggested. However, developing or adopting risk assessment procedures and test systems is a time consuming task and therefore the establishment of risk management options is a pragmatic alternative with immediate effects. Artificial wetlands in the agricultural landscape proved to be important foraging sites for bats and their creation could mitigate negative pesticide effects. The integration of direct and indirect effects in a risk assessment scheme for all organism groups addressing also landscape scale and pesticide mixtures requires a long developing time. The establishment of model landscapes where management options and integrated pest management are applied on a larger scale would allow us to study pesticide effects in a realistic scenario and to develop an approach for the agriculture of the future.