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- Crayfish plague (2)
- Freshwater crayfish (2)
- Antagonistic interactions (1)
- Aphanomyces astaci (1)
- Astacus astacus (1)
- Barbatula barbatula (1)
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Background: For over a century, scientists have studied host-pathogen interactions between the crayfish plague disease agent Aphanomyces astaci and freshwater crayfish. It has been hypothesised that North American crayfish hosts are disease-resistant due to the long-lasting coevolution with the pathogen. Similarly, the increasing number of latent infections reported in the historically sensitive European crayfish hosts seems to indicate that similar coevolutionary processes are occurring between European crayfish and A. astaci. Our current understanding of these host-pathogen interactions is largely focused on the innate immunity processes in the crayfish haemolymph and cuticle, but the molecular basis of the observed disease-resistance and susceptibility remain unclear. To understand how coevolution is shaping the host’s molecular response to the pathogen, susceptible native European noble crayfish and invasive disease-resistant marbled crayfish were challenged with two A. astaci strains of different origin: a haplogroup A strain (introduced to Europe at least 50 years ago, low virulence) and a haplogroup B strain (signal crayfish in lake Tahoe, USA, high virulence). Here, we compare the gene expression profiles of the hepatopancreas, an integrated organ of crayfish immunity and metabolism.
Results: We characterised several novel innate immune-related gene groups in both crayfish spe cies. Across allchallenge groups, we detected 412 differentially expressed genes (DEGs) in the noble crayfish, and 257 DEGs in the marbled crayfish. In the noble crayfish, a clear immune response was detected to the haplogroup B strain, but not to the haplogroup A strain. In contrast, in the marbled crayfish we detected an immune response to the haplogroup A strain, but not to the haplogroup B strain. Conclusions: We highlight the hepatopancreas as an important hub for the synthesis of immune molecules in the response to A. astaci. A clear distinction between the innate immune response in the marbled crayfish and the noble crayfish is the capability of the marbled crayfish to mobilise a higher variety of innate immune response effectors.
Objectives: Crayfish plague disease, caused by the oomycete pathogen Aphanomyces astaci represents one of the greatest risks for the biodiversity of the freshwater crayfish. This data article covers the de novo transcriptome assembly and annotation data of the noble crayfish and the marbled crayfish challenged with Ap. astaci. Following the controlled infection experiment (Francesconi et al. in Front Ecol Evol, 2021, https://doi.org/10.3389/fevo.2021.647037), we conducted a differential gene expression analysis described in (Boštjančić et al. in BMC Genom, 2022, https://doi.org/10.1186/s12864-022-08571-z) Data description: In total, 25 noble crayfish and 30 marbled crayfish were selected. Hepatopancreas tissue was isolated, followed by RNA sequencing using the Illumina NovaSeq 6000 platform. Raw data was checked for quality with FastQC, adapter and quality trimming were conducted using Trimmomatic followed by de novo assembly with Trinity. Assembly quality was assessed with BUSCO, at 93.30% and 93.98% completeness for the noble crayfish and the marbled crayfish, respectively. Transcripts were annotated using the Dammit! pipeline and assigned to KEGG pathways. Respective transcriptome and raw datasets may be reused as the reference transcriptome assemblies for future expression studies.
Agricultural plastic covers made from polyethylene (PE) and polypropylene (PP) provide increased yields and an improved crop quality. However, such covers are suspected of partially breaking down into smaller debris and thereby contributing to soil pollution with microplastics. To scrutinize this, we randomly sampled 240 topsoil cores (0–5 cm) from eight fields which were covered with fleeces, perforated foils, and plastic mulches for less than 2 years. Samples from the field periphery (50 m perimeter) served as a reference. Visual plastic debris > 2 mm was analyzed by Fourier transform infrared spectroscopy. Smaller, soil-associated plastic debris was dispersed from 50 g of fine soil (≤ 2 mm) using sodium hexametaphosphate solution and density-separated with saturated NaCl solution. The collected PE, PP, and polystyrene (PS) debris was selectively dissolved in a mixture of 1,2,4-trichlorobenzene and p-xylene at 150 °C and quantified by pyrolysis–gas chromatography–mass spectrometry (Py-GC/MS). We counted six PE and PS fragments > 2 mm in two out of eight fields. By contrast, Py-GC/MS detected PE, PP, and PS contents in the fine soil of six fields (6 % of all samples). In three fields, PE levels of 3–35 mg kg−1 were potentially associated with the use of thinner and less durable perforated foils (40 µm thickness). This was slightly more pronounced at field edges where the plastic covers are turned and weighed down. By contrast, 50 µm thick PE films were not shown to emit any plastic debris. PP contents of 5–10 mg kg−1 were restricted to single observations in the field centers of three sites. At one site, we found expanded PS particles > 2 mm that concurred with elevated PS levels (8–19 mg kg−1) in the fine soil. Both PP and PS were distributed indistinctly across sites so that their source remained unresolved. In addition, the extent to which plastic contents of up to 7 mg kg−1 in the field periphery of some sites were attributed to wind drift from the covered fields or from external sources needs to be investigated in future studies. Our results suggest that the short-term use of thicker and more durable plastic covers should be preferred over thinner or perforated films to limit plastic emissions and accumulation in soil.