In this bachelor thesis a system for the simulation of the movements of molecules is developed. The calculation of the forces between chemically bonded atoms as well as intermolecular forces is done almost entirely on the GPU. The visualization of the simulation happens at an interactive framerate. To achieve rendering in realtime on off-the-shelf graphics cards, apt optimizations and slight abstractions of the underlying physical models are needed. One can control the execution speed or completely stop the simulation at any given moment. Some of the parameters of the underlying physical models of the simulation can be modified at runtime. With the right settings for the parameters, some phenomena of molecular dynamics can be observed, for example the spacial structure of the molecules.