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Nanotemplates for the combined structural and functional analysis of membrane-associated proteins
(2019)
Plasma membranes are essential for life because they give cells an identity. Plasma membranes are almost impermeable to fluids and substances. Still, transport between inside and outside needs to be possible. An important transport way is endocytosis. This mechanism relies on membrane-associated proteins that sense and induce curvature to the plasma membrane. However, the physics and structural dynamics behind proteins acting on membranes is not well understood. There is a standard method in vitro to investigate membrane-associated proteins sensing spherical geometries: They are incubated on unilamellar vesicles. This procedure allows to analyze these proteins in their bound state. This approach is inappropriate for GRAF1 (GTPase Regulator Associated with Focal Adhesion Kinase-1), a key player in endocytosis because it senses tubular geometries instead. However, GRAF1 extrudes lipid tubes from vesicles that can be analyzed. Still, this is a limited method because these tubes suffer from inhomogeneity and they do not enable the observation of intermediate and lower concentration binding states. To overcome this issue they can be incubated on pre-tubular structures called nanotemplates. There have been studies using carbon nanotubes and Galactosylceramide lipid tubes as nanotemplates. These approaches require complex chemical modifications or expensive components and they are not necessarily flexible. In this work we present a simple and easy new approach to prepare nanotemplates using Folch lipid mixture. We show on the basis of BPG, a truncate of GRAF1, that our nanotemplates are suitable for Cryo-EM and that it is possible to use IHRSR (Iterative Helical Real Space Reconstruction) to analyze the structure of BPG in its bound state. Moreover, the qualification for Cryo-EM allows to use plunge freezing to interrupt the incubation on our nanotemplates abruptly. This enables the analysis of intermediate binding states to understand the binding process.
Tracking is an integral part of many modern applications, especially in areas like autonomous systems and Augmented Reality. For performing tracking there are a wide array of approaches. One that has become a subject of research just recently is the utilization of Neural Networks. In the scope of this master thesis an application will be developed which uses such a Neural Network for the tracking process. This also requires the creation of training data as well as the creation and training of a Neural Network. Subsequently the usage of Neural Networks for tracking will be analyzed and evaluated. This includes several aspects. The quality of the tracking for different degrees of freedom will be checked as well as the the impact of the Neural Network on the applications performance. Additionally the amount of required training data is investigated, the influence of the network architecture and the importance of providing depth data as part of the networks input. This should provide an insight into how relevant this approach could be for its adoption in future products.
Belief revision is the subarea of knowledge representation which studies the dynamics of epistemic states of an agent. In the classical AGM approach, contraction, as part of the belief revision, deals with the removal of beliefs in knowledge bases. This master's thesis presents the study and the implementation of concept contraction in the Description Logic EL. Concept contraction deals with the following situation. Given two concept C and D, assuming that C is subsumed by D, how can concept C be changed so that it is not subsumed by D anymore, but is as similar as possible to C? This approach of belief change is different from other related work because it deals with contraction in the level of concepts and not T-Boxes and A-Boxes in general. The main contribution of the thesis is the implementation of the concept contraction. The implementation provides insight into the complexity of contraction in EL, which is tractable since the main inference task in EL is also tractable. The implementation consists of the design of five algorithms that are necessary for concept contraction. The algorithms are described, illustrated with examples, and analyzed in terms of time complexity. Furthermore, we propose an new approach for a selection function, adapt for the concept contraction. The selection function uses metadata about the concepts in order to select the best from an input set. The metadata is modeled in a framework that we have designed, based on standard metadata frameworks. As an important part of the concept contraction, the selection function is responsible for selecting the best concepts that are as similar as possible to concept C. Lastly, we have successfully implemented the concept contraction in Python, and the results are promising.
Streams are coupled with their riparian area. Emerging insects from streams can be an important prey in the riparian area. Such aquatic subsidies can cause predators to switch prey or increase predator abundances. This can impact the whole terrestrial food web. Stressors associated with agricultural land use can alter insect communities in water and on land, resulting in complex response patterns of terrestrial predators that rely on prey from both systems.
This thesis comprises studies on the impact of aquatic nsects on a terrestrial model ecosystem (Objective 1, hapter 2), the influence of agricultural land use on riparian spiders’ traits and community (Objective 2, Chapter 3), and on the impact of agricultural land use on the contribution of different prey to spider diet (Objective 3, Chapter 4).
In chapter 2, I present a study where we conducted a mesocosm experiment to examine the effects of aquatic subsidies on a simplified terrestrial food web consisting of two types of herbivores (leafhoppers and weevils), plants and predators (spiders). I focused on the prey choice of the spiders by excluding predator immigration and reproduction. In accordance with predator switching, survival of leafhoppers increased in the presence of aquatic subsidies. By contrast, the presence of aquatic subsidies indirectly reduced weevils and herbivory.
In chapter 3, I present the results on the taxonomic and trait response of riparian spider communities to gradients of agricultural stressors and environmental variables, with a particular emphasis on pesticides. To capture spiders with different traits and survival strategies, we used multiple collection methods. Spider community composition was best explained by in-stream pesticide toxicity and shading of the stream bank, a proxy for the quality of the habitat. Species richness and the number of spider individuals, as well as community ballooning ability, were negatively associated with in-stream pesticide toxicity. In contrast, mean body size and shading preference of spider communities responded strongest to shading,
whereas mean niche width (habitat preference for moisture and shading) responded strongest to other environmental variables.
In chapter 4, I describe aquatic-terrestrial predator-prey relations with gradients of agricultural stressors and environmental variables. I sampled spiders, as well as their aquatic and terrestrial prey along streams with an assumed pesticide pollution gradient and determined their stable carbon and nitrogen signals. Potential aquatic prey biomass correlated positively with an increasing aquatic prey contribution of T. montana. The contribution of aquatic prey to the diet of P. amentata showed a positive relationship with increasing toxicity in streams.
Overall, this thesis contributes to the emerging discipline of cross-ecosystem ecology and shows that aquatic-terrestrial linkages and riparian food webs can be influenced by land use related stressors. Future manipulative field studies on aquatic-terrestrial linkages are required that consider the quality of prey organisms, fostering mechanistic understanding of such crossecosystem effects. Knowledge on these linkages is important to improve understanding of consequences of anthropogenic stressors and to prevent further losses of ecosystems and their biodiversity.
Student misbehavior and its treatment is a major challenge for teachers and a threat to their well-being. Indeed, teachers are obliged to punish student misbehavior on a regular basis. Additionally, teachers’ punishment decisions are among the most frequently reported situations when it comes to students’ experiences of injustice in school. By implication, it is crucial to understand teachers’ treatment of student misbehavior vis-à-vis students’ perceptions. One key dimension of punishment behavior reflects its underlying motivation and goals. People generally intend to achieve three goals when punishing misbehavior, namely, retribution (i.e., evening out the harm caused), special prevention (i.e., preventing recidivism of the offender), and general prevention (i.e., preventing imitation of others). Importantly, people’s support of these punishment goals is subject to hierarchy and power, implying that teachers’ and students’ punishment goal preferences differ. In this dissertation, I present three research projects that shed first light on teachers’ punishment and its goals along with the students’ perception of classroom intervention strategies pursuing these goals. More specifically, I first examined students’ (i.e., children’s) general support of each of the three punishment goals sketched above. Furthermore, I applied an attributional approach to understand and study the goals teachers intend to achieve when punishing student misbehavior. Finally, I investigated teachers’ and students’ support of the punishment goals regarding the same student misbehavior to directly compare their views on these goals and reactions pursuing them. In sum, the findings show that students generally prefer retribution and special prevention to general prevention, whereas teachers prefer general prevention and special prevention to retribution. This ultimately translates into a "mismatch" of teachers and students in their preferences for specific punishment goals, and the findings suggest that this may indeed enhance students’ perception of injustice. Overall, the results of the present research program may be valuable for the development of classroom intervention strategies that may reduce rather than enhance conflicts in student-teacher-interactions.
To construct a business process model manually is a highly complex and error-prone task which takes a lot of time and deep insights into the organizational structure, its operations and business rules. To improve the output of business analysts dealing with this process, different techniques have been introduced by researchers to support them during construction with helpful recommendations. These supporting recommendation systems vary in their way of what to recommend in the first place as well as their calculations taking place under the hood to recommend the most fitting element to the user. After a broad introduction into the field of business process modeling and its basic recommendation structures, this work will take a closer look at diverse proposals and descriptions published in current literature regarding implementation strategies to effectively and efficiently assist modelers during their business process model creation. A critical analysis of presentations in the selected literature will point out strengths and weaknesses of their approaches, studies and descriptions of those. As a result, the final concept matrix in this work will give a precise and helpful overview about the key features and recommendation methods used and implemented in previous research studies to pinpoint an entry into future works without the downsides already spotted by fellow researchers.
This paper describes the robots TIAGo and Lisa used by
team homer@UniKoblenz of the University of Koblenz-Landau, Germany,
for the participation at the RoboCup@Home 2019 in Sydney,
Australia. We ended up first at RoboCup@Home 2019 in the Open Platform
League and won the competition in our league now three times
in a row (four times in total) which makes our team the most successful
in RoboCup@Home. We demonstrated approaches for learning from
demonstration, touch enforcing manipulation and autonomous semantic
exploration in the finals. A special focus is put on novel system components
and the open source contributions of our team. We have released
packages for object recognition, a robot face including speech synthesis,
mapping and navigation, speech recognition interface, gesture recognition
and imitation learning. The packages are available (and new packages
will be released) on http://homer.uni-koblenz.de.
The loss of biodiversity is recognised on a global scale and also in the anthropogenic landscapes used for agriculture, now covering almost 50% of the global terrestrial land surface. In agriculture pesticides, biologically active chemicals are deliberately distributed to control pests, disease and weeds in the cropped areas. The quantification of remaining semi-naturals structures such as field margins and hedges is a prerequisite to understand the impact of pesticides on biodiversity, since these structures represent habitats for many organisms in agricultural landscapes. The presence of organisms in these habitats and crops is required to obtain an estimate of their potential pesticide exposure. In this text I provide studies on animal groups so far not addressed in risk assessment procedures for the regulation of pesticides such as amphibians, moths and bats. For all groups it becomes apparent that they are present in agricultural landscapes and potentially coincide with pesticide applications indicating a risk. Risk quantification also requires data on the sensitivity of organisms and here data for plants, amphibians and bees are presented. Effects translating to community level were studied for herbicide, insecticide and fertiliser effects in a natural system. After three years the treatments resulted in simplified plant communities with lower species numbers and a reduction in flowering plants. This reduction of flowers is used as an example for an indirect effect and was especially obvious for the effect of an herbicide on the common buttercup. Sublethal herbicide effects for a plant translated in an impact on feeding caterpillars, indicating a reduction in food quality. Insecticide inputs realistic for field margins also reduced moth pollination of white champion flowers by 30%. These indirect effects by distortions of food web characteristics are playing a critical role to understand declines in organism groups, however so far are not accounted for in pesticide risk assessment schemes. The current intense use of pesticides in agriculture and their inherent toxicity may lead to a chemical landscape fragmentation, where populations may not be connected anymore. Source-sink dynamics are important ecological processes and as a final result not only population size but also genetic population structure might be affected. Including potential pesticide impacts as costs in a model for amphibians migrating to breeding ponds in vineyards in Rhineland-Palatinate indicated the isolation of investigated populations. A first validation by analyzing the population structure of the European common frog confirmed the model prediction for some sites. For the regulation of pesticides in Europe a risk assessment is required and for the organisms of the terrestrial habitat a multitude of guidance documents is in place or is recently developed or improved. The results of the presented research indicate that wild plants and especially their reproductive flower stage are highly sensitive and risks are underestimated. Population recovery of arthropods needs a reevaluation at landscape scale and the addition of amphibian risk assessment in regulation procedures is suggested. However, developing or adopting risk assessment procedures and test systems is a time consuming task and therefore the establishment of risk management options is a pragmatic alternative with immediate effects. Artificial wetlands in the agricultural landscape proved to be important foraging sites for bats and their creation could mitigate negative pesticide effects. The integration of direct and indirect effects in a risk assessment scheme for all organism groups addressing also landscape scale and pesticide mixtures requires a long developing time. The establishment of model landscapes where management options and integrated pest management are applied on a larger scale would allow us to study pesticide effects in a realistic scenario and to develop an approach for the agriculture of the future.
The goal of this master thesis was to develop a CRM system for the Assist team of CompuGroup Medical that is aiding in integrating open innovation into the development of the Minerva 2.0 software. To achieve this, CRM methodology has been combined with Social Networking Systems, following the research of Lin and Chen (2010, pp. 11 – 30). To achieve the predefined goals literature has been analyzed on how to successfully im- plement a CRM system as well as an online community. Subsequently the results have been applied to the development of the Minerva Community according to the guidelines of Design Science suggested by Hevner et al. (2004, pp. 75 – 104). The finished product is designed based on customer and management requirements and evaluated from a customer and company perspective.
Despite the inception of new technologies at a breakneck pace, many analytics projects fail mainly due to the use of incompatible development methodologies. As big data analytics projects are different from software development projects, the methodologies used in software development projects could not be applied in the same fashion to analytics projects. The traditional agile project management approaches to the projects do not consider the complexities involved in the analytics. In this thesis, the challenges involved in generalizing the application of agile methodologies will be evaluated, and some suitable agile frameworks which are more compatible with the analytics project will be explored and recommended. The standard practices and approaches which are currently applied in the industry for analytics projects will be discussed concerning enablers and success factors for agile adaption. In the end, after the comprehensive discussion and analysis of the problem and complexities, a framework will be recommended that copes best with the discussed challenges and complexities and is generally well suited for the most data-intensive analytics projects.
The erosion of the closed innovation paradigm in conjunction with increasing competitive pressure has boosted the interest of both researchers and organizations in open innovation. Despite such rising interest, several companies remain reluctant to open their organizational boundaries to practice open innovation. Among the many reasons for such reservation are the pertinent complexity of transitioning toward open innovation and a lack of understanding of the procedures required for such endeavors. Hence, this thesis sets out to investigate how organizations can open their boundaries to successfully transition from closed to open innovation by analyzing the current literature on open innovation. In doing so, the transitional procedures are structured and classified into a model comprising three phases, namely unfreezing, moving, and institutionalizing of changes. Procedures of the unfreezing phase lay the foundation for a successful transition to open innovation, while procedures of the moving phase depict how the change occurs. Finally, procedures of the institutionalizing phase contribute to the sustainability of the transition by employing governance mechanisms and performance measures. Additionally, the individual procedures are characterized along with their corresponding barriers and critical success factors. As a result of this structured depiction of the transition process, a guideline is derived. This guideline includes the commonly employed actions of successful practitioners of open innovation, which may serve as a baseline for interested parties of the paradigm. With the derivation of the guideline and concise depiction of the individual transitional phases, this thesis consequently reduces the overall complexity and increases the comprehensibility of the transition and its implications for organizations.
Thesis is devoted to the topic of challenges and solutions for human resources management (HRM) in international organizations. The aim is to investigate methodological approaches to assessment of HRM challenges and solutions, and to apply them on practice, to develop ways of improvement of HRM of a particular enterprise. The practical research question investigated is “Is the Ongoing Professional Development – Strategic HRM (OPD-SHRM) model a better solution for HRM system of PrJSC “Philip Morris Ukraine”?”
To achieve the aim of this work and to answer the research question, we have studied theoretical approaches to explaining and assessing HRM in section 1, analyzed HRM system of an international enterprise in section 2, and then synthesized theory and practice to find intersection points in section 3.
Research findings indicate that the main challenge of HRM is to balance between individual and organizational interests. Implementation of OPD-SHRM is one of the solutions. Switching focus from satisfaction towards success will bring both tangible and intangible benefits for individuals and organization. In case of PrJSC “Philip Morris Ukraine”, the maximum forecasted increase is 330% in net profit, 350% in labor productivity, and 26% in Employee Development and Engagement Index.
Software systems have an increasing impact on our daily lives. Many systems process sensitive data or control critical infrastructure. Providing secure software is therefore inevitable. Such systems are rarely being renewed regularly due to the high costs and effort. Oftentimes, systems that were planned and implemented to be secure, become insecure because their context evolves. These systems are connected to the Internet and therefore also constantly subject to new types of attacks. The security requirements of these systems remain unchanged, while, for example, discovery of a vulnerability of an encryption algorithm previously assumed to be secure requires a change of the system design. Some security requirements cannot be checked by the system’s design but only at run time. Furthermore, the sudden discovery of a security violation requires an immediate reaction to prevent a system shutdown. Knowledge regarding security best practices, attacks, and mitigations is generally available, yet rarely integrated part of software development or covering evolution.
This thesis examines how the security of long-living software systems can be preserved taking into account the influence of context evolutions. The goal of the proposed approach, S²EC²O, is to recover the security of model-based software systems using co-evolution.
An ontology-based knowledge base is introduced, capable of managing common, as well as system-specific knowledge relevant to security. A transformation achieves the connection of the knowledge base to the UML system model. By using semantic differences, knowledge inference, and the detection of inconsistencies in the knowledge base, context knowledge evolutions are detected.
A catalog containing rules to manage and recover security requirements uses detected context evolutions to propose potential co-evolutions to the system model which reestablish the compliance with security requirements.
S²EC²O uses security annotations to link models and executable code and provides support for run-time monitoring. The adaptation of running systems is being considered as is round-trip engineering, which integrates insights from the run time into the system model.
S²EC²O is amended by prototypical tool support. This tool is used to show S²EC²O’s applicability based on a case study targeting the medical information system iTrust.
This thesis at hand contributes to the development and maintenance of long-living software systems, regarding their security. The proposed approach will aid security experts: It detects security-relevant changes to the system context, determines the impact on the system’s security and facilitates co-evolutions to recover the compliance with the security requirements.
The development of a game engine is considered a non-trivial problem. [3] The architecture of such simulation software must be able to manage large amounts of simulation objects in real-time while dealing with “crosscutting concerns” [3,p. 36] between subsystems. The use of object oriented paradigms to model simulation objects in class hierarchies has been reported as incompatible with constantly changing demands during game development [2, p. 9], resulting in anti-patterns and eventual, messy refactoring.[13]
Alternative architectures using data oriented paradigms revolving around object composition and aggregation have been proposed as a result. [13, 9, 1, 11]
This thesis describes the development of such an architecture with the explicit goals to be simple, inherently compatible with data oriented design, and to make reasoning about performance characteristics possible. Concepts are formally defined to help analyze the problem and evaluate results. A functional implementation of the architecture is presented together with use cases common to simulation software.
While the existing literature on cooperative R&D projects between firms and public research institutes (PRI) has made valuable contributions by examining various factors and their influence on different outcome measures, there has been no investigation of cooperative R&D project success between firms and PRI from a product competitive advantage perspective. However, insights into the development of a meaningful and superior product (i.e., product competitive advantage) are particularly important in the context of cooperative R&D projects between PRI and (mainly small and medium-sized) firms in the biotechnology industry in response to increasing competition to raise capital funds necessary for survival.
The objectives of this thesis are: (1) to elaborate the theoretical foundations which explain the achievement of a product competitive advantage in cooperative R&D projects between biotechnology firms and PRI, (2) to identify and empirically evaluate the determining factors for achieving a product competitive advantage in cooperative R&D projects between biotechnology firms and PRI, and (3) to show how cooperative R&D projects between biotechnology firms and PRI should be designed and executed to support the achievement of a product competitive advantage.
To accomplish these objectives, a model of determinants of product competitive advantage in cooperative R&D projects between biotechnology firms and PRI is developed by drawing from the theoretical foundations of resource-based theory and information-processing theory. The model is evaluated using data from 517 questionnaires on cooperative R&D projects between at least one biotechnology firm and one PRI. The data are analyzed using variance-based structural equation modeling (i.e., PLS-SEM) in order to conduct hypotheses testing. The evaluation of the empirical data includes an additional mediation analysis and the comparison of effects in subsamples.
The results demonstrate the importance of available resources and skills, as well as the proficient execution of marketing-related and technical activities for the achievement of a product competitive advantage in cooperative R&D projects between biotechnology firms and PRI. By identifying project-related and process-related factors affecting product competitive advantage and empirically testing their relationships, the research findings should be valuable for both researchers and practitioners. After discussing contributions and implications for research and practice, the present thesis concludes with limitations and avenues for future research.
Lakes and reservoirs are important sources of methane, a potent greenhouse gas. Although freshwaters cover only a small fraction of the global surface, their contribution to global methane emission is significant and this is expected to increase, as a positive feedback to climate warming and exacerbated eutrophication. Yet, global estimates of methane emission from freshwaters are often based on point measurements that are spatio-temporally biased. To better constrain the uncertainties in quantifying methane fluxes from inland waters, a closer examination of the processes transporting methane from sediment to atmosphere is necessary. Among these processes, ebullition (bubbling) is an important transport pathway and is a primary source of uncertainty in quantifying methane emissions from freshwaters. This thesis aims to improve our understanding of ebullition in freshwaters by studying the processes of methane bubble formation, storage and release in aquatic sediments. The laboratory experiments demonstrate that aquatic sediments can store up to ~20% (volumetric content) gas and the storage capacity varies with sediment properties. The methane produced is stored as gas bubbles in sediment with minimal ebullition until the storage capacity is reached. Once the sediment void spaces are created by gas bubble formation, they are stable and available for future bubble storage and transport. Controlled water level drawdown experiments showed that the amounts of gas released from the sediment scaled with the total volume of sediment gas storage and correlated linearly to the drop in hydrostatic pressure. It was hypothesized that not only the timing of ebullition is controlled by sediment gas storage, but also the spatial distribution of ebullition. A newly developed freeze corer, capable of characterizing sediment gas content under in situ environments, enabled the possibility to test the hypothesis in a large subtropical lake (Lake Kinneret, Israel). The results showed that gas content was variable both vertically and horizontally in the lake sediment. Sediment methane production rate and sediment characteristics could explain these variabilities. The spatial distribution of ebullition generally was in a good agreement with the horizontal distribution of depth-averaged (surface 1 m) sediment gas content. While discrepancies were found between sediment depth-integrated methane production and the snapshot ebullition rate, they were consistent in a long term (multiyear average). These findings provide a solid basis for the future development of a process-based ebullition model. By coupling a sediment transport model with a sediment diagenetic model, general patterns of ebullition hotspots can be predicted at a system level and the uncertainties in ebullition flux measurements can be better constrained both on long-term (months to years) and short-term (minutes to hours) scales.
The mitral valve is one of four human heart valves. It is located in the left heart and acts as a unidirectional passageway for blood between the left atrium and the left ventricle. A correctly functioning mitral valve prevents a backflow of blood into the pulmonary circulation (lungs) and thus constitutes a vital part of the cardiac cycle. Pathologies of the mitral valve can manifest in a variety of symptoms with severity ranging from chest pain and fatigue to pulmonary edema (fluid accumulation in the tissue and air space of lungs), which may ultimately cause respiratory failure.
Malfunctioning mitral valves can be restored through complex surgical interventions, which greatly benefit from intensive planning and pre-operative analysis. Visualization techniques provide a possibility to enhance such preparation processes and can also facilitate post-operative evaluation. The work at hand extends current research in this field, building upon patient-specific mitral valve segmentations developed at the German Cancer Research Center, which result in triangulated 3D models of the valve surface. The core of this work will be the construction of a 2D-view of these models through global parameterization, a method that can be used to establish a bijective mapping between a planar parameter domain and a surface embedded in higher dimensions.
A flat representation of the mitral valve provides physicians with a view of the whole surface at once, similar to a map. This allows assessment of the valve's area and shape without the need for different viewing angles. Parts of the valve that are occluded by geometry in 3D become visible in 2D.
An additional contribution of this work will be the exploration of different visualizations of the 3D and 2D mitral valve representations. Features of the valve can be highlighted by associating them with specified colors, which can for instance directly convey pathology indicators.
Quality and effectiveness of the proposed methods were evaluated through a survey conducted at the Heidelberg University Hospital.
Groundwater is essential for the provision of drinking water in many areas around the world. The ecosystem services provided by groundwater-related organisms are crucial for the quality of groundwater-bearing aquifers. Therefore, if remediation of contaminated groundwater is necessary, the remediation method has to be carefully selected to avoid risk-risk trade-offs that might impact these valuable ecosystems. In the present thesis, the ecotoxicity of the in situ remediation agent Carbo-Iron (a composite of zero valent nano-iron and active carbon) was investigated, an estimation of its environmental risk was performed, and the risk and benefit of a groundwater remediation with Carbo-Iron were comprehensively analysed.
At the beginning of the work on the present thesis, a sound assessment of the environmental risks of nanomaterials was impeded by a lack of guidance documents, resulting in many uncertainties on selection of suitable test methods and a low comparability of test results from different studies with similar nanomaterials. The reasons for the low comparability were based on methodological aspects of the testing procedures before and during the toxicity testing. Therefore, decision trees were developed as a tool to systematically decide on ecotoxicity test procedures for nanomaterials. Potential effects of Carbo-Iron on embryonic, juvenile and adult life stages of zebrafish (Danio rerio) and the amphipod Hyalella azteca were investigated in acute and chronic tests. These tests were based on existing OECD and EPA test guidelines (OECD, 1992a, 2013a, 2013b; US EPA, 2000) to facilitate the use of the obtained effect data in the risk assessment. Additionally, the uptake of particles into the test organisms was investigated using microscopic methods. In zebrafish embryos, effects of Carbo-Iron on gene expression were investigated. The obtained ecotoxicity data were complemented by studies with the waterflea Daphnia magna, the algae Scenedesmus vacuolatus, larvae of the insect species Chironomus riparius and nitrifying soil microorganisms.
In the fish embryo test, no passage of Carbo-Iron particles into the perivitelline space or the embryo was observed. In D. rerio and H. azteca, Carbo-Iron was detected in the gut at the end of exposure, but no passage into the surrounding tissue was detected. Carbo-Iron had no significant effect on soil microorganisms and on survival and growth of fish. However, it had significant effects on the growth, feeding rate and reproduction of H. azteca and on survival and reproduction in D. magna. Additionally, the development rate of C. riparius and the cell volume of S. vacuolatus were negatively influenced.
A predicted no effect concentration of 0.1 mg/L was derived from the ecotoxicity studies based on the no-effect level determined in the reproduction test with D. magna and an assessment factor of 10. It was compared to measured and modelled environmental concentrations for Carbo-Iron after application to an aquifer contaminated with chlorohydrocarbons in a field study. Based on these concentrations, risk quotients were derived. Additionally, the overall environmental risk before and after Carbo-Iron application was assessed to verify whether the chances for a risk-risk trade-off by the remediation of the contaminated site could be minimized. With the data used in the present study, a reduced environmental risk was identified after the application of Carbo-Iron. Thus, the benefit of remediation with Carbo-Iron outweighs potential negative effects on the environment.
Engineering criminal agents
(2019)
This PhD thesis with the title "Engineering Criminal Agents" demonstrates the interplay of three different research fields captured in the title: In the centre are Engineering and Simulation, both set in relation with the application field of Criminology - and the social science aspect of the latter. More precisely,
this work intends to show how specific agent-based simulation models can be created using common methods from software engineering.
Agent-based simulation has proven to be a valuable method for social science since decades, and the trend to increasingly complex simulation models is apparent, not at least due to advancing computational and simulation techniques. An important cause of complexity is the inclusion of 'evidence' as basis of simulation models. Evidence can be provided by various stakeholders, reflecting their different viewpoints on the topic to model.
This poses a particular burden by interrelating the two relevant perspectives on the topic of simulation: on the one hand the user of the simulation model who provides the requirements and is interested in the simulation results, on the other hand the developer of the simulation model who has to program a verified and validated formal model. In order to methodically link these two perspectives, substantial efforts in research and development are needed, where this PhD thesis aims to make a contribution.
The practical results - in terms of software - were achieved by using the multi-faceted approach mentioned above: using methods from software engineering, in order to become able to apply methods from computational social sciences, in order to gain insights into social systems, such as in the internal dynamics of criminal networks.
The PhD thesis shows the research involved to create these practical results, and gives technical details and specifications of the developed software.
The frame for research and development to achieve these results was provided mainly by two research projects: OCOPOMO and GLODERS.
Business Process Querying (BPQ) is a discipline in the field of Business Process Man- agement which helps experts to understand existing process models and accelerates the development of new ones. Its queries can fetch and merge these models, answer questions regarding the underlying process, and conduct compliance checking in return. Many languages have been deployed in this discipline but two language types are dominant: Logic-based languages use temporal logic to verify models as finite state machines whereas graph-based languages use pattern matching to retrieve subgraphs of model graphs directly. This thesis aims to map the features of both language types to features of the other to identify strengths and weaknesses. Exemplarily, the features of Computational Tree Logic (CTL) and The Diagramed Modeling Language (DMQL) are mapped to one another. CTL explores the valid state space and thus is better for behavioral querying. Lacking certain structural features and counting mechanisms it is not appropriate to query structural properties. In contrast, DMQL issues structural queries and its patterns can reconstruct any CTL formula. However, they do not always achieve exactly the same semantic: Patterns treat conditional flow as sequential flow by ignoring its conditions. As a result, retrieved mappings are invalid process execution sequences, i.e. false positives, in certain scenarios. DMQL can be used for behavioral querying if these are absent or acceptable. In conclusion, both language types have strengths and are specialized for different BPQ use cases but in certain scenarios graph-based languages can be applied to both. Integrating the evaluation of conditions would remove the need for logic-based languages in BPQ completely.
Implementation of Agile Software Development Methodology in a Company – Why? Challenges? Benefits?
(2019)
The software development industry is enhancing day by day. The introduction of agile software development methodologies was a tremendous structural change in companies. Agile transformation provides unlimited opportunities and benefits to the existing and new developing companies. Along with benefits, agile conversion also brings many unseen challenges. New entrants have the advantage of being flexible and cope with the environmental, consumer, and cultural changes, but existing companies are bound to rigid structure.
The goal of this research is to have deep insight into agile software development methodology, agile manifesto, and principles behind the agile manifesto. The prerequisites company must know for agile software development implementation. The benefits a company can achieve by implementing agile software development. Significant challenges that a company can face during agile implementation in a company.
The research objectives of this study help to generate strong motivational research questions. These research questions cover the cultural aspects of company agility, values and principles of agile, benefits, and challenges of agile implementation. The project management triangle will show how benefits of cost, benefits of time, and benefits of quality can be achieved by implementing agile methodologies. Six significant areas have been explored, which shows different challenges a company can face during implementation agile software development methodology. In the end, after the in depth systematic literature review, conclusion is made following some open topics for future work and recommendations on the topic of implementation of agile software development methodology in a company.
Willingness to pay and willingness to accept on a two-sided platform - The use case of DoBeeDo
(2019)
It is widely known that especially for technology-based start-ups, entrepreneurs need to set up the boundaries of the business and define the product/service to offer in order to minimize the risk of failure. The goal of this thesis is to not only emphasize the importance of the business model development and evaluation but also show an example customer validation process for an emerging start-up named DoBeeDo, which is a mobile app operating on a two-sided market. During the process of customer validation a survey has been conducted to evaluate the interest of the target groups as well as the fit of their expectations using the Willingness to Pay and Willingness to Accept measures. The paper includes an analysis and evaluation of the gathered results and assesses whether the execution of the Customer Development Model can be continued.
The Internet of Things (IoT) is a fast-growing, technological concept, which aims to integrate various physical and virtual objects into a global network to enable interaction and communication between those objects (Atzori, Iera and Morabito, 2010). The application possibilities are manifold and may transform society and economy similarly to the usage of the internet (Chase, 2013). Furthermore, the Internet of Things occupies a central role for the realisation of visionary future concepts, for example, Smart City or Smart Healthcare. In addition, the utilisation of this technology promises opportunities for the enhancement of various sustainability aspects, and thus for the transformation to a smarter, more efficient and more conscious dealing with natural resources (Maksimovic, 2017). The action principle of sustainability increasingly gains attention in the societal and academical discourse. This is reasoned by the partly harmful consumption and production patterns of the last century (Mcwilliams et al., 2016). Relating to sustainability, the advancing application of IoT technology also poses risks. Following the precautionary principle, these risks should be considered early (Harremoës et al., 2001). Risks of IoT for sustainability include the massive amounts of energy and raw materials which are required for the manufacturing and operation of IoT objects and furthermore, the disposal of those objects (Birkel et al., 2019). The exact relations in the context of IoT and sustainability are insufficiently explored to this point and do not constitute a central element within the discussion of this technology (Behrendt, 2019). Therefore, this thesis aims to develop a comprehensive overview of the relations between IoT and sustainability.
To achieve this aim, this thesis utilises the methodology of Grounded Theory in combination with a comprehensive literature review. The analysed literature primarily consists of research contributions in the field of Information Technology (IT). Based on this literature, aspects, solution approaches, effects and challenges in the context of IoT and sustainability were elaborated. The analysis revealed two central perspectives in this context. IoT for Sustainability (IoT4Sus) describes the utilisation and usage of IoT-generated information to enhance sustainability aspects. In contrast, Sustainability for IoT (Sus4IoT) fo-cuses on sustainability aspects of the applied technology and highlights methods to reduce negative impacts, which are associated with the manufacturing and operation of IoT. Elaborated aspects and relations were illustrated in the comprehensive CCIS Framework. This framework represents a tool for the capturing of relevant aspects and relations in this context and thus supports the awareness of the link between IoT and sustainability. Furthermore, the framework suggests an action principle to optimise the performance of IoT systems regarding sustainability.
The central contribution of this thesis is represented by the providence of the CCIS Framework and the contained information regarding the aspects and relations of IoT and sustainability.
This work describes a novel software tool for visualizing anatomical segmentations of medical images. It was developed as part of a bachelor's thesis project, with a view to supporting research into automatic anatomical brain image segmentation. The tool builds on a widely-used visualization approach for 3D image volumes, where sections in orthogonal directions are rendered on screen as 2D images. It implements novel display modes that solve common problems with conventional viewer programs. In particular, it features a double-contour display mode to aid the user's spatial orientation in the image, as well as modes for comparing two competing segmentation labels pertaining to one and the same anatomical region. The tool was developed as an extension to an existing open-source software suite for medical image processing. The visualization modes are, however, suitable for implementation in the context of other viewer programs that follow a similar rendering approach.
The modified code can be found here: soundray.org/mm-segmentation-visualization.tar.gz.
The goal of this thesis is to create a recommender system (RS) for business processes, based on the existing ProM plugin RegPFA. To accomplish this task, firstly an interface must be created that sets up and expands a database receiving probabilistic finite automata (PFA) created by RegPFA in tsml format as input. Secondly, a Java program must be designed that uses said database to recommend the process elements that are most likely to follow a given sequence of process elements.
Sediment transport contributes to the movement of inorganic and organic material in rivers. The construction of a dam interrupts the continuity of this sediment transport through rivers, causing sediments to accumulate within the reservoir. Reservoirs can also act as carbon sinks and methane can be released when organic matter in the sediment is degraded under anoxic conditions. Reservoir sedimentation poses a great threat to the sustainability of reservoirs worldwide, and can emit the potent greenhouse gas methane into the atmosphere. Sediment management measures to rehabilitate silted reservoirs are required to achieve both better water quantity and quality, as well as to mitigate greenhouse gas emissions.
This thesis aims at the improvement of sediment sampling techniques to characterize sediment deposits as a basis for accurate and efficient water jet dredging and to monitor the dredging efficiency by measuring the sediment concentration. To achieve this, we investigated freeze coring as a method to sample (gas-bearing) sediment in situ. The freeze cores from three reservoirs obtained were scanned using a non-destructive X-Ray CT scan technique. This allows the determination of sediment stratification and character-ization of gas bubbles to quantify methane emissions and serve as a basis for the identi-fication of specific (i.e. contaminated) sediment layers to be dredged. The results demon-strate the capability of freeze coring as a method for the characterization of (gas-bearing) sediment and overcomes certain limitations of commonly used gravity cores. Even though the core’s structure showed coring disturbances related to the freezing process, the general core integrity seems to not have been disturbed. For dredging purposes, we analyzed the impact pressure distribution and spray pattern of submerged cavitating wa-ter jets and determined the effects of impinging distances and angles, pump pressures and spray angles. We used an adapted Pressure Measurement Sensing technique to enhance the spatial distribution, which proved to be a comparatively easy-to-use meas-urement method for an improved understanding of the governing factors on the erosional capacity of cavitating water jets. Based on this data, the multiple linear regression model can be used to predict the impact pressure distribution of those water jets to achieve higher dredging accuracy and efficiency. To determine the dredging operational efficien-cy, we developed a semi-continuous automated measurement device to measure the sediment concentration of the slurry. This simple and robust device has lower costs, compared to traditional and surrogate sediment concentration measurement technolo-gies, and can be monitored and controlled remotely under a wide range of concentrations and grain-sizes, unaffected by entrained gas bubbles
Abstract
This bachelor thesis delivers a comprehensive overview of the topic Internet of Things (IoT). With the help of a first literature review, important characteristics, architectures, and properties have been identified. The main aim of this bachelor thesis is to determine whether the use of IoT in the transport of food, considering the compliance with the cold chain, can provide advantages for companies to reduce food waste. For this purpose, a second literature review has been carried out with food transport systems without the use, as well as with the use of IoT. Based on the literature review, it is possible at the end to determine a theoretical ‘ideal’ system for food transport in refrigerated trucks. The respective used technologies are also mentioned. The findings of several authors have shown that often significant improvements can be achieved in surveillance, transport in general, or traceability of food, and ultimately food waste can be reduced. However, benefits can also be gained using new non-IoT-based technologies. Thus, the main knowledge of this bachelor thesis is that a theoretical ‘ideal’ transport system contains a sensible combination of technologies with and without IoT. This system includes the use of a Wireless Sensor Network (WSN) for real-time food monitoring, as well as an alarm function when the temperature exceeds a maximum. Real-time monitoring with GPS coupled with a monitoring center to prevent traffic jams is another task. Smart and energy-efficient packaging, and finally the use of the new supercooling-technology, make the system significantly more efficient in reducing food waste. These highlights, that when choosing a transport system, which is as efficient and profitable as possible for food with refrigerated transport, companies need not just rely on the use of IoT. On this basis, it is advisable to combine the systems and technologies used so far with IoT in order to avoid as much food waste as possible.
Commonsense reasoning can be seen as a process of identifying dependencies amongst events and actions. Understanding the circumstances surrounding these events requires background knowledge with sufficient breadth to cover a wide variety of domains. In the recent decades, there has been a lot of work in extracting commonsense knowledge, a number of these projects provide their collected data as semantic networks such as ConceptNet and CausalNet. In this thesis, we attempt to undertake the Choice Of Plausible Alternatives (COPA) challenge, a problem set with 1000 questions written in multiple-choice format with a premise and two alternative choices for each question. Our approach differs from previous work by using shortest paths between concepts in a causal graph with the edge weight as causality metric. We use CausalNet as primary network and implement a few design choices to explore the strengths and drawbacks of this approach, and propose an extension using ConceptNet by leveraging its commonsense knowledge base.
With the appearance of modern virtual reality (VR) headsets on the consumer market, there has been the biggest boom in the history of VR technology. Naturally, this was accompanied by an increasing focus on the problems of current VR hardware. Especially the control in VR has always been a complex topic.
One possible solution is the Leap Motion, a hand tracking device that was initially developed for desktop use, but with the last major software update it can be attached to standard VR headsets. This device allows very precise tracking of the user’s hands and fingers and their replication in the virtual world.
The aim of this work is to design virtual user interfaces that can be operated with the Leap Motion to provide a natural method of interaction between the user and the VR environment. After that, subject tests are performed to evaluate their performance and compare them to traditional VR controllers.
This dissertation deals with the opportunities and restrictions that parties face in an election campaign at the supranational level of the EU. Using communication science concepts of agenda-setting (focus: media) and agenda-building (focus: political parties), the first part of the study is based on the election campaign for the European Parliament (EP) in 2014. It analyses to what extent political parties put the EU on the agenda. Second, it is examined whether parties have used their structural advantage of being able to influence the media agenda at the supranational level during the election campaign in the context of the EP election campaign. Third, it is examined whether parties can gain an advantage for the visibility of their campaigns by rejecting EU integration and the associated conflictual communication. Fourth and final, it will be explored whether agenda-building can influence the rankings of specific policy issues on the media agenda in the European context.
First, the analyses show that a European political focus of election campaign communication can no longer be found only on the part of the small (eurosceptic) parties. Second, parties have a good chance of being present in media coverage if the they pursue a European political focus in their campaign communication. Third, a negative tone in party communication turns out not to be decisive for the parties' visibility in the election campaign. Fourth, a clear positioning on political issues also prepares parties for restrictions of the further development of a European thematic agenda. After a discussion of these results, the paper concludes with an assessment of the analysis limitations and an outlook on further research approaches.
The status of Business Process Management (BPM) recommender systems is not quite clear as research states. The use of recommenders familiarized itself with the world during the rise of technological evolution in the past decade.Ever since then, several BPM recommender systems came about. However, not a lot of research is conducted in this field. It is not well known to what broad are the technologies used and how are they used. Moreover, this master’s thesis aims at surveying the BPM recommender systems existing. Building on this, the recommendations come in different shapes. They can be positionbased where an element is to be placed at an element’s front, back or to autocomplete a missing link. On the other hand, Recommendations can be textual, to fill the labels of the elements. Furthermore, the literature review for BPM recommender systems took place under the guides of a literature review framework. The framework suggests 5stages of consecutive stages for this sake. The first stage is defining a scope for the research. Secondly, conceptualizing the topic by choosing key terms for literature research. After that in the third stage, comes the research stage.As for the fourth stage, it suggests choosing analysis features over which the literature is to be synthesized and compared. Finally, it recommends defining the research agenda to describe the reason for the literature review. By invoking the mentioned methodology, this master’s thesis surveyed 18 BPM recommender systems. It was found as a result of the survey that there
are not many different technologies for implementing the recommenders. It was also found that the majority of the recommenders suggest nodes that are yet to come in the model, which is called forward recommending. Also, one of the results of the survey indicated the scarce use of textual recommendations to BPM labels. Finally, 18 recommenders are considered less than excepted for a developing field therefore as a result, the survey found a shortage in the number of BPM recommender systems. The results indicate several shortages in several aspects in the field of BPM recommender systems. On this basis, this master’s thesis recommends the future work on it the results.
Current political issues are often reflected in social media discussions, gathering politicians and voters on common platforms. As these can affect the public perception of politics, the inner dynamics and backgrounds of such debates are of great scientific interest. This thesis takes user generated messages from an up-to-date dataset of considerable relevance as Time Series, and applies a topic-based analysis of inspiration and agenda setting to it. The Institute for Web Science and Technologies of the University Koblenz-Landau has collected Twitter data generated beforehand by candidates of the European Parliament Election 2019. This work processes and analyzes the dataset for various properties, while focusing on the influence of politicians and media on online debates. An algorithm to cluster tweets into topical threads is introduced. Subsequently, Sequential Association Rules are mined, yielding wide array of potential influence relations between both actors and topics. The elaborated methodology can be configured with different parameters and is extensible in functionality and scope of application.
In this thesis, I present the results of my studies on taxonomy, systematics, and biogeography of Impatiens (Balsaminaceae) in Madagascar and the Comoro islands.
In Chapter 1 I reviewed the literature on taxonomy and classification of Balsaminaceae, on habitat, world distribution, morphology, molecular phylogenetics and infrageneric classification of the genus Impatiens. In Chapters 2-15 (Fischer & Rahelivololona 2002, 2003, 2004, 2007, 2015a, 2015b, 2015c, 2016, Fischer et al. 2004. 2017, 2018a, b submitted, Rahelivololona et al. 2003) I presented the first results of a revision of Balsaminaceae of Madagascar and the Comoro islands including the description of 78 new species. In Chapter 16 (Yuan et al. 2004) we worked on the phylogeny and biogeography of Balsaminaceae inferred from ITS sequences using combined results from molecular phylogenetic and morphological analyses. In Chapter 17 (Rahelivololona et al. 2018) we conducted a phylogeny and assessment of the infrageneric classification of species in the Malagasy Impatiens (Balsaminaceae) with a particular emphasis on taxa collected from Marojejy.
Below I summarise the most important findings of each chapter and provide an outlook for future studies.
How many species of Impatiens occur in Madagascar and the Comoro islands?
To provide additional information on the taxonomic revision of Impatiens in Madagascar and the Comoro islands, the identification of already described species as well as the description of new species was conducted. Based on herbarium specimens from BR, G, K, NEU, P, TAN and on living plants collected during several field trips, 78 new species and 6 nomina nova have been published and another 70 new taxa are already identified. Actually more than 260 species occur in Madagascar and the Comoro islands and all of them are endemic. For each species, a description of the morphology, phenology, ecology and known distribution range was provided. Apart from new taxa, the delimitation of already described species like Impatiens firmula Baker and Impatiens hildebrandtii Baill. could be clarified by studying the types and by observing the variability in the field.
Are the groups of Impatiens in Madagascar monophyletic, and what is the systematic position of Trimorphopetalum?
Yuan & al. (2004) conducted a molecular phylogenetic study to examine the morphological and karyological evolution, and the historical biogeography of the Balsaminaceae family by using nucleotide sequence data of internal transcribed spacer regions of nuclear ribosomal DNA. The results support the monophyly of the Malagasy endemic section Trimorphopetalum and show that the cleistogamous Impatiens inaperta should be included in the sect. Trimorphopetalum which is the most derived within Impatiens. Therefore, the section Preimpatiens proposed by Perrier de la Bâthie (1934) is paraphyletic.
Rahelivololona & al. (2018) provided a phylogenetic study focused on three subdivisions (based on macromorphological characters) proposed by Perrier de la Bâthie (1934). The analysis was done using two nuclear AP3/DEF homologues (ImpDEF1 and ImpDEF2) and the plastid atpB-rbcL spacer to reassess or assess the monophyly of the Malagasy Impatiens, of the sections Preimpatiens (Humblotianae and Vulgare groups) and Trimorphopetalum. A focus was on the species of Impatiens from the Marojejy National Park and of the morphologically variable species I. elatostemmoides, I. “hammarbyoides”, I. inaperta and I. manaharensis, using monophyly as the primary criterion.
As results the Malagasy Impatiens are paraphyletic and the section Preimpatiens sensu Perrier de la Bâthie (1934) (= subgen. Impatiens sensu Fischer & Rahelivololona 2002) was not resolved as a monophyletic group. The section Trimorphopetalum sensu Perrier de la Bâthie (1934) (= subgen. Trimorphopetalum sensu Fischer & Rahelivololona 2002), however, was strongly confirmed as a monophyletic lineage (BS: 92; BPP: 1). Neither the Humblotianae group nor the Vulgare group was supported as monophyletic. None of the morphologically variable species appeared to be monophyletic and the sampled species of Impatiens from the Marojejy National Park do also not form a monophyletic group.
What are the biogeographical position and the distribution patterns of Impatiens in Madagascar and the Comoro islands?
Investigation of the geographical affinities and species distribution of section Impatiens (including Humblotianae group and Vulgare group) and section Trimorphopetalum were conducted and the origin and evolution as well as species richness and endemism were discussed.
The isolation, the climate and the complex topography of Madagascar have generated the microhabitats and ecological niches favourable to the diversification of Impatiens species. Impatiens of Madagascar with 260 endemic species is actually the largest genus in Madagascar. Therefore, Madagascar and the Comoro islands are among the most species-rich regions in the world for Impatiens.
Future studies
In Impatiens on Madagascar, there remain numerous unresolved questions that need to be adressed:
• A further study based on a much larger molecular data set and sampling from the entire geographic ranges of Impatiens in Madagascar is needed to retest the monophyly of the different subgenera and sections, as well as a molecular dating of the Malagasy Impatiens.
• The study of pollinators as a key for understanding the radiation and species richness is required: Within Impatiens the different shapes of spur are related to pollinators (bees, birds, butterflies and moths). Therefore pollinator observation of specific species need to be done to understand the radiation of species by adaptation and coevolution with these pollinators. A pollination study with a large number of species within section Trimorphopetalum will help to understand the mechanism of complete disappearance of the spur, the shift of pollinators and the evolution of species richness.
• The destruction of the natural habitats of Impatiens and the subsequent reduction of humidity in logged area constitute a severe threat for the survival of many species. The conservation and reforestation of vulnerable areas such as Ankaratra, Daraina, Mandraka and Col des Tapia near Antsirabe is required.
• In terms of conservation and to mitigate the threat on the genus, a study on the ex-situ-conservation of Malagasy Impatiens species is very important as long as some species are suitable for horticultural purposes (e.g. Impatiens mayae-valeriae, Impatiens emiliae and species with broad red spur).
• Finally, the publication of the revision of Impatiens of Madagascar and the Comoro islands will help other botanists to identify the species and will thus increase our knowledge on the group.
Ecological assessment approaches based on benthic invertebrates in Euphrates tributaries in Turkey
(2019)
Sustainable water management requires methods for assessing ecological stream quality. Many years of limnological research are needed to provide a basis for developing such methods. However, research of this kind is still lacking in Turkey. Therefore, the aim of this doctoral thesis was to provide basic research in the field of aquatic ecology and to present methods for the assessment of ecological stream quality based on benthic invertebrates. For this purpose, I selected 17 tributaries of the Euphrates with a similar typology/water order and varying levels of pollution or not affected by pollution at all. The characterisation of the natural mountain streams was the first important step in the analysis of ecological quality. Based on community indices, I found that the five selected streams had a very good ecological status. I also compared the different biological indications, collected on two occasions ¬– once in spring (May) and once in autumn (September) – to determine the optimal sampling time. The macroinvertebrate composition differed considerably between the two seasons, with the number of taxa and Shannon index being significantly higher in autumn than in spring. In the final step, I examined the basal resources of the macroinvertebrates in the reference streams with an isotope analysis. I found that FPOM and biofilm were the most relevant basal resources of benthic invertebrates. Subsequently, based on the similarity of their community structures, I divided the 17 streams into three quality classes, supported by four community indices (EPT [%], EPTCBO [%], number of individuals, evenness). In this process, 23 taxa were identified as indicators for the three quality classes. In the next step, I presented two new or adapted indices for the assessment of quality class. Firstly, I adapted the Hindu Kush-Himalaya biotic index to the catchment area of the Euphrates and created a new, ecoregion-specific score list (Euph-Scores) for 93 taxa. The weighted ASPT values, which were renamed the Euphrates Biotic Score (EUPHbios) in this study, showed sharper differentiations of quality classes compared to the other considered ASPT values. Thus, this modified index has proved to be very effective and easy to implement in practical applications. As a second biological index, I suggested the proportion of habitat specialists. To calculate this index, the habitat preferences of the 20 most common benthic invertebrates were identified using the new habitat score. The proportion of habitat specialists differed significantly among the three quality classes with higher values in natural streams than in polluted streams. The methods and results presented in this doctoral thesis can be used in a multi-metric index for a Turkish assessment programme.
Over the past few decades society’s dependence on software systems has grown significantly. These systems are utilized in nearly every matter of life today and often handle sensitive, private data. This situation has turned software security analysis into an essential and widely researched topic in the field of computer science. Researchers in this field tend to make the assumption that the quality of the software systems' code directly affects the possibility for security gaps to arise in it. Because this assumption is based on properties of the code, proving it true would mean that security assessments can be performed on software, even before a certain version of it is released. A study based on this implication has already attempted to mathematically assess the existence of such a correlation, studying it based on quality and security metric calculations. The present study builds upon that study in finding an automatic method for choosing well-fitted software projects as a sample for this correlation analysis and extends the variety of projects considered for the it. In this thesis, the automatic generation of graphical representations both for the correlations between the metrics as well as for their evolution is also introduced. With these improvements, this thesis verifies the results of the previous study with a different and broader project input. It also focuses on analyzing the correlations between the quality and security metrics to real-world vulnerability data metrics. The data is extracted and evaluated from dedicated software vulnerability information sources and serves to represent the existence of proven security weaknesses in the studied software. The study discusses some of the difficulties that arise when trying to gather such information and link it to the difference in the information contained in the repositories of the studied projects. This thesis confirms the significant influence that quality metrics have on each other. It also shows that it is important to view them together as a whole and suppose that their correlation could influence the appearance of unwanted vulnerabilities as well. One of the important conclusions I can draw from this thesis is that the visualization of metric evolution graphs, helps the understanding of the values as well as their connection to each other in a more meaningful way. It allows for better grasp of their influence on each other as opposed to only studying their correlation values. This study confirms that studying metric correlations and evolution trends can help developers improve their projects and prevent them from becoming difficult to extend and maintain, increasing the potential for good quality as well as more secure software code.
Deformable Snow Rendering
(2019)
Accurate snow simulation is key to capture snow's iconic visuals. Intricate
methods exist that attempt to grasp snow behaviour in a holistic manner. Computational complexity prevents them from reaching real-time performance. This thesis presents three techniques making use of the GPU that focus on the deformation of a snow surface in real-time. The approaches are examined by their ability to scale with an increasing number of deformation actors and their visual portrayal of snow deformation. The findings indicate that the approaches maintain real-time performance well into several hundred individual deformation actors. However, these approaches each have their individual restrictions handicapping the visual results. An experimental approach is to combine the techniques at reduced deformation actor count to benefit from the detailed, merged deformation pattern.
Our work finds the fine grained edits in context of neighbouring tokens in Wikipedia articles. We cluster those edits according to similar neighbouring context. We encode neighbouring context into vector space using word vectors. We evaluate clusters returned by our algorithm on extrinsic and intrinsic metric and compare it with previous work. We analyse the relation between extrinsic and intrinsic measurements of fine grained edit tokens.
Most social media platforms allow users to freely express their opinions, feelings, and beliefs. However, in recent years the growing propagation of hate speech, offensive language, racism and sexism on the social media outlets have drawn attention from individuals, companies, and researchers. Today, sexism both online and offline with different forms, including blatant, covert, and subtle lan- guage, is a common phenomenon in society. A notable amount of work has been done over identifying sexist content and computationally detecting sexism which exists online. Although previous efforts have mostly used peoples’ activities on social media platforms such as Twitter as a public and helpful source for collecting data, they neglect the fact that the method of gathering sexist tweets could be biased towards the initial search terms. Moreover, some forms of sexism could be missed since some tweets which contain offensive language could be misclassified as hate speech. Further, in existing hate speech corpora, sexist tweets mostly express hostile sexism, and to some degree, the other forms of sexism which also appear online was disregarded. Besides, the creation of labeled datasets with manual exertion, relying on users to report offensive comments with a tremendous effort by human annotators is not only a costly and time-consuming process, but it also raises the risk of involving discrimination under biased judgment.
This thesis generates a novel sexist and non-sexist dataset which is constructed via "UnSexistifyIt", an online web-based game that incentivizes the players to make minimal modifications to a sexist statement with the goal of turning it into a non-sexist statement and convincing other players that the modified statement is non-sexist. The game applies the methodology of "Game With A Purpose" to generate data as a side-effect of playing the game and also employs the gamification and crowdsourcing techniques to enhance non-game contexts. When voluntary participants play the game, they help to produce non-sexist statements which can reduce the cost of generating new corpus. This work explores how diverse individual beliefs concerning sexism are. Further, the result of this work highlights the impact of various linguistic features and content attributes regarding sexist language detection. Finally, this thesis could help to expand our understanding regarding the syntactic and semantic structure of sexist and non-sexist content and also provides insights to build a probabilistic classifier for single sentences into sexist or non-sexist classes and lastly find a potential ground truth for such a classifier.
Small headwater streams comprise most of the total channel length and catchment area in fluvial networks. They are tightly connected to their catchments and, thus, are highly vulnerable to changes in catchment hydrologic budgets and land use. Although these small, often fishless streams are of little economic interest, they are vital for the ecological and chemical state of larger water bodies. Although numerous studies investigate the impact of various anthropogenic stressors or altered catchment conditions, we lack an in-depth understanding of the natural conditions and processes in headwater streams. This natural state, however, largely affects how a headwater stream responds to anthropogenic or climatic changes. One of the major threats to aquatic ecosystems is the excessive anthropogenic input of nutrients leading to eutrophication. Nutrients exert a bottom-up effect in the food web, foremost affecting primary producers and their consumers, i.e. periphyton and benthic grazers in headwater streams. The periphyton-grazer link is the main path of autochthonous (in-stream) production into the stream food web and the strength of this link largely determines the effectiveness of this pathway. Therefore, this thesis aims at elucidating important biological processes with the explicit focus on periphyton-grazer interactions. I assessed different aspects of periphyton-grazer interactions using laboratory experiments to solve methodological problems, and using a field study to compare the benthic communities of three morphologically similar, phosphorus-limited, near-natural headwater streams. With the results of the laboratory experiments, I was able to show that periphyton RNA/DNA ratios can be used as proxy for periphyton growth rates in controlled experiments and that the fatty acid composition of grazing mayfly nymphs responds to changes in fatty acids provided by the diet after only two weeks. The use of the RNA/DNA ratio as a proxy for periphyton growth rate allows a comparison of these growth rates even in simple experimental set-ups and thereby permits the inclusion of this important process in ecotoxicological or ecological experiments. The observed fast turnover rates of fatty acids in consumer tissues show that even short-term changes in available primary producers can alter the fatty acid composition of primary consumers with important implications for the supply of higher trophic levels with physiologically important polyunsaturated fatty acids. With the results of the field study, I revealed gaps in the understanding of the linkages between catchment and in-stream phosphorus availability under near-natural conditions and demonstrated that seemingly comparable headwater streams had significantly different benthic communities. These differences most likely affect stream responses to environmental changes.
Business rules have become an important tool to warrant compliance at their business processes. But the collection of these business rules can have various conflicting elements. This can lead to a violation of the compliance to be achieved. This conflicting elements are therefore a kind of inconsistencies, or quasi incon- sistencies in the business rule base. The target for this thesis is to investigate how those quasi inconsistencies in business rules can be detected and analyzed. To this aim, we develop a comprehensive library which allows to apply results from the scientific field of inconsistency measurement to business rule formalisms that are actually used in practice.
Data visualization is an effective way to explore data. It helps people to get a valuable insight of the data by placing it in a visual context. However, choosing a good chart without prior knowledge in the area is not a trivial job. Users have to manually explore all possible visualizations and decide upon ones that reflect relevant and desired trend in the data, are insightful and easy to decode, have a clear focus and appealing appearance. To address these challenges we developed a Tool for Automatic Generation of Good viSualizations using Scoring (TAG²S²). The approach tackles the problem of identifying an appropriate metric for judging visualizations as good or bad. It consists of two modules: visualization detection: given a data-set it creates a list of combination of data attributes for scoring and visualization ranking: scores each chart and decides which ones are good or bad. For the later, an utility metric of ten criteria was developed and each visualization detected in the first module is evaluated on these criteria. Only those visualizations that received enough scores are then presented to the user. Additionally to these data parameters, the tool considers user perception regarding the choice of visual encoding when selecting a visualization. To evaluate the utility of the metric and the importance of each criteria, test cases were developed, executed and the results presented.
The bio-insecticide Bacillus thuringiensis israelensis (Bti) has worldwide become the most commonly used agentin mosquito control programs that pursue two main objectives: the control of vector-borne diseases and the reduction of nuisance, mainly coming frommosquitoes that emerge in large quantities from seasonal wetlands. The Upper Rhine Valley, a biodiversity hotspot in Germany, has been treated withBti for decades to reduce mosquito-borne nuisance and increase human well-being.Although Btiis presumed to be an environmentally safe agent,adverse effects on wetland ecosystems are still a matter of debate especially when it comes to long-term and indirect effects on non-target organisms. In light of the above, this thesis aims at investigating direct and indirect effects of Bti-based mosquito control on non-target organisms within wetland food chains.Effects were examinedin studies with increasingeco(toxico)logical complexity, ranging from laboratory over mesocosm to field approaches with a focus on the non-biting Chironomidae and amphibian larvae (Rana temporaria, Lissotriton sp.).In addition, public acceptance of environmentally less invasive alternative mosquito control methods was evaluated within surveys among the local population.
Chironomids were the most severely affected non-target aquatic invertebrates. Bti substantially reduced larval and adult chironomid abundances and modified their species composition. Repeated exposures to commonly used Bti formulations induced sublethal alterations of enzymatic biomarkers activityin frog tadpoles. Bti-induced reductions of chironomid prey availability indirectly decreased body size of newts at metamorphosis and increased predation on newt larvae in mesocosm experiments. Indirect effects of severe reductions in midge biomassmight equally be passed through aquatic but also terrestrial food chains influencing predators of higher trophic levels. The majority ofaffectedpeople in the Upper Rhine Valley expressed a high willingness to contributefinancially to environmentally less harmful mosquito control.Alternative approaches could still include Bti applications excepting treatment of ecologically valuable areas. Potentially rising mosquito levels could be counteracted with local acting mosquito traps in domestic and urban areas because mosquito presence was experienced as most annoying in the home environment.
As Bti-based mosquito control can adversely affect wetland ecosystems, its large-scale applications, including nature conservation areas, should be considered more carefully to avoid harmful consequences for the environmentat the Upper Rhine Valley.This thesis emphasizesthe importance to reconsiderthe current practice of mosquito control and encourage research on alternative mosquito control concepts that are endorsed by the local population. In the context ofthe ongoing amphibian and insect declinesfurther human-induced effects onwetlands should be avoided to preserve biodiversity in functioning ecosystems.
Grapevine growers have struggled with defending their crops against pests and diseases since the domestication of grapevine over 6000 ears ago. Since then, new growing methods paired with a better nderstanding of the ecological processes in the vineyard ecosystem continue to improve quality and quantity of grape harvests. In this thesis I am describing the effects of two recent innovations in viticulture on pest and beneficial arthropods in vineyards; Fungus-resistant grapevine cultivars (PIWIs) and the pruning system semi-minimal pruned hedge (SMPH). The SMPH pruning system allows for a drastic reduction of manual labor in the vineyard, and PIWIs are resistant to two of the most common fungal diseases of grapevine and therefore allow a drastic reduction of fungicide applications compared to conventional varieties. Heavy use of pesticides is linked to a number of problems, including pollution of waterways, negative effects on human health, and biodiversity loss. Here, I studied the effects of fungicide reduction and minimal pruning on arthropods that are beneficial for natural pest suppression in the vineyard ecosystem such as predatory mites, spiders, ants, earwigs, and lacewings. All of these groups either benefitted from the reduction of fungicide sprayings or were not significantly affected. Structural changes in the canopy of SMPH grapevines altered the microclimate in the canopy which in turn influenced some of the arthropods living in it. Overall, my findings suggest that PIWIs and SMPH, both in combination or separately, improve conditions for natural pest control. This adds to other advantages of these innovative management practices such as a reduction in production cost and a smaller impact on the environment.